Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,735,139 | Δ1 bp | 10.8% | coding (36/3093 nt) | PP_3302 → | RND family transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,735,139 | 0 | A | . | 10.8% | 107.8 / 8.2 | 37 | coding (36/3093 nt) | PP_3302 | RND family transporter |
Reads supporting (aligned to +/- strand): ref base A (17/16); new base . (2/2); total (19/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.90e-01 |
ACCTGCACGCTGGCGATCGGATCGTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTATCACTGCCTGGCCCGGCGCCACTGCGC > NC_002947/3734998‑3735287 | aCCTGCACGCTGGCGATCGGATCGTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAc‑gc < 3:372281/148‑1 (MQ=255) aCCTGCACGCTGGCGATCGGATCGTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAc‑gc < 3:284671/148‑1 (MQ=255) ccTGCACGCTGGCGATCGGATCGTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑gcga < 1:326260/149‑1 (MQ=255) cTGCACGCTGGCAATCGGATCGTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑gcgag > 8:138178/1‑149 (MQ=255) gCACGCTGGCGATCGGATCGTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑gcgagc > 4:164194/1‑148 (MQ=255) cACGCTGGCGATCGGATCGTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCATCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGC‑GTACTgcgagcgc < 8:92971/149‑2 (MQ=255) cACGCTGGCGATCGGATCGTCGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGC‑GTACTgcgagcgc < 4:218199/149‑2 (MQ=255) aCGCTGGCGATCGGATCGTGGCACTGGGTGCGCATCTGCTGCGCTATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGat < 3:164194/149‑1 (MQ=255) gatcggatcgTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGATTCAACTTAACCGCGCTAGCACTAC‑CCGAGCGATCAATCAcc > 5:308575/1‑149 (MQ=255) tGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTc > 8:195947/1‑145 (MQ=255) tGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTc < 7:195947/145‑1 (MQ=255) gATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGTCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACg > 1:294506/1‑149 (MQ=255) gTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGcc > 3:362401/1‑149 (MQ=255) gAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCttt > 2:298587/1‑149 (MQ=255) aGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCtttt < 5:141033/149‑1 (MQ=255) aTGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAg > 6:69822/1‑149 (MQ=255) aGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGcc < 7:138178/149‑1 (MQ=255) gCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCaa < 4:171109/139‑1 (MQ=255) gCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCaa > 3:171109/1‑139 (MQ=255) aaaCAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTg > 8:291644/1‑146 (MQ=255) aaCAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCaga < 2:294506/149‑1 (MQ=255) aaCAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCATGATTGTGATGATCGCCTTCGCCGGCACGCTGGACTTTTTCAACCTGGGCCGTGCag > 6:320668/1‑148 (MQ=255) aGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTc < 5:81809/108‑1 (MQ=255) aGCTCAGGTCATGCGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTc > 6:81809/1‑108 (MQ=255) tGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCa > 8:10059/1‑149 (MQ=255) gggCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCAcc < 4:362401/149‑1 (MQ=255) gggCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGCCCGTGCAGAAGATCCGCCCTTCAcc > 4:196699/1‑149 (MQ=255) cACCAACAATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTc < 6:308575/149‑1 (MQ=255) caaccaTGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATc < 6:227361/83‑1 (MQ=255) caaccaTGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATc > 5:227361/1‑83 (MQ=255) aGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGAtt < 5:69822/149‑1 (MQ=255) cTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTAt < 7:291644/149‑1 (MQ=255) aCTTATCCTCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTATCACTGCCTgg < 5:320668/149‑1 (MQ=255) cTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTATCACTGCCTGGc > 5:33433/1‑149 (MQ=255) tcgcTCGC‑GTACTGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTATCACTGCCTGGCCCGgcgc > 8:260588/2‑149 (MQ=255) tcgcTCGC‑GTACTGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTATCACTGCCTGGCCCGgcgc > 4:119559/2‑149 (MQ=255) tCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTATCACTGCCTGGCCCGGCGCCACt > 2:148012/1‑149 (MQ=255) aGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTATCACTGCCTGGCCCGGCGCCACTgcgc < 5:320869/149‑1 (MQ=255) aGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTATCACTGCCTGGCCCGGCGCCACTgcg > 6:320869/1‑148 (MQ=255) | ACCTGCACGCTGGCGATCGGATCGTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAC‑GCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTATCACTGCCTGGCCCGGCGCCACTGCGC > NC_002947/3734998‑3735287 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |