New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 189705	78 (1.200)	4 (0.060)	4/254	NT	5.3%	coding (1814/1947 nt)	PP_0165	GGDEF domain‑containing protein
	?	NC_002947	= 189728	68 (1.090)					coding (1837/1947 nt)	PP_0165	GGDEF domain‑containing protein

CGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGATTGGCAACCTGGCGCATTTGGGCCTGGCGTACCTGAAGATTGACGGCAGTTACATCCGCAACATCGATCATGAGCAGCACAAGCGGCTGTTCATCGAAGCGATCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/189556‑189705 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgGCAGGTCGATGCTATGCGCCGCACGCTGGATCGCTTCGAT  <  NC_002947/189728‑189689                                                                                                                                                                                                CGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGATTGGCAACCTGGCGCATTTGGGCCTGGCGTACCTGAAGATTGACGGCAGTTACATCCGCAACATCGATCATGAGCAGCACAAGCGGCTGTTCATCGAAGCGATCCA                                             <  3:356683/147‑1          TTTGCAACGCTTCGGTGGGCACTTCAGCATGATTGGCAACCTGGCGCATTTGGGCCTGGCGTACCTGAAGATTGACGGCAGTTACATCCGCAACATCGATCATGAGCAGCACAAGCGGCTGTTCATCGAAGCGATCCAGCGGCAGGTC                                   >  1:216271/1‑148                                   AGCATGATTGGCAACCTGGCGCATTTGGGCCTGGCGTACCTGAAGATTGACGGCAGTTACATCCGCAACATCGATCATGAGCAGCACAAGCGGCTGTTCATCGAAGCGATCCAGCGGCAGGTCGATGCTATGCGCCGCACGCTGGATC          <  2:216271/148‑1                                                                CCTGGCGTACCTGAAGATTGACGGCAGTTACATCCGCAACATCGATCATGAGCAGCACAAGCGGCTGTTCATCGAAGCGATCCAGCGGCAGGTCGATGCTATGCGTCGCACGCTGGATCGCTTCGAT  <  8:25166/127‑1                                                                CCTGGCGTACCTGAAGATTGACGGCAGTTACATCCGCAACATCGATCATGAGCAGCACAAGCGGCTGTTCATCGAAGCGATCCAGCGGCAGGTCGATGCTATGCGACGCACGCTGGATCGCTTCGAT  >  7:25166/1‑127                                                                                                                                                                                                CGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAGCATGATTGGCAACCTGGCGCATTTGGGCCTGGCGTACCTGAAGATTGACGGCAGTTACATCCGCAACATCGATCATGAGCAGCACAAGCGGCTGTTCATCGAAGCGATCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/189556‑189705 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgGCAGGTCGATGCTATGCGCCGCACGCTGGATCGCTTCGAT  <  NC_002947/189728‑189689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.