| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 249203 = | 60 (0.920) | 5 (0.080) | 5/252 | NT | 7.5% | coding (645/747 nt) | qmcA | membrane protease family protein |
| ? | NC_002947 | 249245 = | 66 (1.060) | coding (603/747 nt) | qmcA | membrane protease family protein | |||||
GTCGATGGTACGCGCCATCGCCCGCCAGGCCGAGGCCGAGCGCGAACGTCGGGCCAAGGTGATTCATGCCGAGGGTGAACTGCAGGCGTCGGAGAAACTGATGCAAGCCGCGCAAATGCTGAGCAAGGAACCGGGGGCGATGCAGTTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/249353‑249203‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcgcGGCTTGCATCAGTTTCTCCGACGCCTGCAGTTCACCCTCGGCATGAATCACCTTGGCCCGACGTTCGCGCTCGGCCTCGGCCTGGCGGGCGATGGCGCGTACCATCGACTCGTTCAGGTCAACGTGCTTGATCTCGACGTTGGCC > NC_002947/249245‑249389 GTCGATGGTACGCGCCATCGCCCGCCAGGCCGAGGCCGAGCGCGAACGTCGGGCCAAGGTGATTCATGCCGAGGGTGAACTGCAGGCGTCGGAGAAACTGATGCAAGCCGCGCAAATGCTGAGCAAGGAACCGGGGGCGATGCAGTTGC > 3:21254/1‑149GTCGATGGTACGCGCCATCGCCCGCCAGGCCGAGGCCGAGCGCGAACGTCGGGCCAAGGGGATTCATGCCGAGGGTGAACTGCAGGCGTCGGAGAAACTGATGCAAGCCGCGCAAATGCTGAGCAAGGAACCGGGGGCGATGCAGTTGC < 7:363222/149‑1 CCGCGCAAATGCTGAGCAAGGAACCGGGGGCGATGCAGTTGCGCGGCTTGCATCAGTTTCTCCGACGCCTGCAGTTCACCCTCGGCATGAATCACCTTGGCCCGACGTTCGCGCTCGGCCTCGGCCTGGCGGGCGATGGCGCGTACCAT > 2:43842/1‑149 CGCAAATGCTGAGCAAGGAACCGGGGGCGATGCAGTTGCGCGGCTTGCATCAGTTTCTCCGACGCCTGCAGTTCACCCTCGGCATGAATCACCTTGGCCCGACGTTCGCGCTCGGCCTCGGCCTGGCGGGCGATGGCGCGTACCATCGA > 2:56482/1‑149 GCAAATGCTGAGCAAGGAACCGGGGGCGATGCAGTTGCGCGGCTTGCATCAGTTTCTCCGACGCCTGCAGTTCACACTCGGCATGAATCACCTTGGCCCGACGTTCGCGCTCGGCCTCGGCCTGGCGGGCGATGGCGCGTACCATCGAC > 3:336163/1‑149 AGGAACCGGGGGCGATGCAGTTGCGCGGCTTGCATCAGTTTCTCCGACGCCTGCAGTTCACCCTCGGCATGAATCACCTTGGCCCGACGTTCGCGCTCGGCCTCGGCCTGGCGGGCGATGGCGCGTACCATCGACTCGTTCAGGTCAAC < 4:336163/149‑1 ACCGGGGGCGATGCAGTTGCGCGGCTTGCATCAGTTTCTCCGACGCCTGCAGTTCACCCTCGGCATGAATCACCTTGGCCCGACGTTCGCGCTCGGCCTCGGCCTGGCGGGCGATGGCGCGTACCATCGACTCGTTCAGGTCAACGTGC < 1:43842/149‑1 CGCGGCTTGCATCAGTTTCTCCGACGCCTGCAGTTCACCCTCGGCATGAATCACCTTGGCCCGACGTTCGCGCTCGGCCTCGGCCTGGCGGGCGATGGCGCGTACCATCGACTCGTTCAGGTCAACGTGCTTGATCTCGACGTTGGCC < 7:14621/148‑1 CGCGGCTTGCATCAGTTTCTCCGACGCCTGCAGTTCACCCTCGGCATGAATCACCTTGGCCCGACGTTCGCGCTCGGCCTCGGCCTGGCGGGCGATGGCGCGTACCATCGACTCGTTCAGGTCAACGTGCTTGATCTCGACGTTGGCC < 8:192045/148‑1 GTCGATGGTACGCGCCATCGCCCGCCAGGCCGAGGCCGAGCGCGAACGTCGGGCCAAGGTGATTCATGCCGAGGGTGAACTGCAGGCGTCGGAGAAACTGATGCAAGCCGCGCAAATGCTGAGCAAGGAACCGGGGGCGATGCAGTTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/249353‑249203‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcgcGGCTTGCATCAGTTTCTCCGACGCCTGCAGTTCACCCTCGGCATGAATCACCTTGGCCCGACGTTCGCGCTCGGCCTCGGCCTGGCGGGCGATGGCGCGTACCATCGACTCGTTCAGGTCAACGTGCTTGATCTCGACGTTGGCC > NC_002947/249245‑249389 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |