New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 262457	51 (0.780)	3 (0.050)	3/254	NT	5.6%	coding (939/966 nt)	PP_0210	phycobiliprotein
	?	NC_002947	= 262523	52 (0.830)					coding (40/282 nt)	PP_0211	hypothetical protein

CGCTTGGCGGCTTGCTTGGCCATGGCATCGCCAACCTGCGCAAGGAGGCGGCGCTGGCGCTGGGCGAGCTGGGCCAGGCGCGTGCTTTGTCGGTGCTGCAGGCCGCCGAGGCCGACAGCGACCCCGAGGTGAGCAAGGCTGTGCGGATTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/262306‑262457 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgccCTGGCCCGCGCAAGTTGCGAATGGCTTGCGGGGCGTTCATCAGGCAGCCCCGCGCAGTTGCGCCAAGGCAATCCGCACAGCCTTGCTCACCTCGGGGTCGCTGTCGGCCTCGGCGGCCTGCAGCACCGACAAAGCACGCGCCTGGCC  <  NC_002947/262523‑262377                                                                                                                                                                                                                                                                                                             CGCTTGGCGGCTTGCTTGGCCATGGCATCGCCAACCTGCGCAAGGAGGCGGCGCTGGCGCTGGGCGAGCTGGGCCAGGCGCGTGCTTTGTCGGTGCTGCAGGCCGCCGAGGCCGACAGCGACCCCGAGGTGAGCAAGGCTGTGCGGATT                                                                                                                                                        <  2:86588/149‑1  GCTTGGCGGCTTGCTTGGCCATGGCATCGCCAACCTGCGCAAGGAGGCGGCGCTGGCGCTGGGCGAGCTGGGCCAGGCGCGTGCTTTGTCGGTGCTGCAGGCCGCCGAGGCCGACAGCGACCCCGAGGTGAGCAAGGCTGTGCGGATTG                                                                                                                                                       >  2:56944/1‑149    TTGGCGGCTTGCTTGGCCATGGCATCGCCAACCTGCGCAAGGAGGCGGCGCTGGCGCTGGGCGAGCTGGGCCAGGCGCGTGCTTTGTCGGTGCTGCAGGCCGCCGAGGCCGACAGCGACCCCGAGGTGAGCAAGGCTGTGCGGATTGCC                                                                                                                                                     >  5:303315/1‑149                                             GAGGCGGCGCTGGCGCTGGGCGAGCTGGGCCAGGCGCGTGCTTTGTCGGTGCTGCAGGCCGCCGAGGCCGACAGCGACCCCGAGGTGAGCAAGGCTGTGCGGATTGCCCTGGCCCGCGCAAGTTGCGAATGGCTTGCGGGGCGTTCAT                                                                                                             >  1:4418/1‑148                                                                        GGCCAGGCGCGTGCTTTGTCGGTGCTGCAGGCCGCCGAGGCCGACAGCGACCCCGAGGTGAGCAAGGCTGTGCGGATTGCCCTGGCCCGCGCAAGTTGCGAATGGCTTGCGGGGCGTTCATCAGGCAGCCCCGCGCAGTTGCGCCAAGG                                                                                 <  5:338390/149‑1                                                                             GGCGCGTGCTTTGTCGGTGCTGCAGGCCGCCGAGGCCGACAGCGACCCCGAGGTGAGCAAGGCTGTGCGGATTGCCCTGGCCCGCGCAAGTTGCGAATGGCTTGCGGGGCGTTCATCAGGCAGCCCCGCGCAGTTGCGCCAAGGCAATC                                                                            <  2:4418/149‑1                                                                                                                                                       CCCTGGCCCGCGCAAGTTGCGAATGGCTTGCGGGGCGTTCATCAGGCAGCCCCGCGCAGTTGCGCCAAGGCAATCCGCACAGCCTTGCTCCCCTCGGGGTCGCTGTCGGCCTCGGCGGCCTGCAGCACCGACAAAGCACGCGCATGGCC  >  6:411485/1‑149                                                                                                                                                       CCCTGGCCCGCGCAAGTTGCGAATGGCTTGCGGGGCGTTCATCAGGCAGCCCCGCGCAGTTGCGCCAAGGCAATCCGCACAGCCTTGCTCACCTCGGGGTCGCTGTCGGCCTCGGCGGCCTGCAGCACCGACAAAGCACGCGCCTGGCC  >  6:63241/1‑149                                                                                                                                                                                                                                                                                                             CGCTTGGCGGCTTGCTTGGCCATGGCATCGCCAACCTGCGCAAGGAGGCGGCGCTGGCGCTGGGCGAGCTGGGCCAGGCGCGTGCTTTGTCGGTGCTGCAGGCCGCCGAGGCCGACAGCGACCCCGAGGTGAGCAAGGCTGTGCGGATTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/262306‑262457 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgccCTGGCCCGCGCAAGTTGCGAATGGCTTGCGGGGCGTTCATCAGGCAGCCCCGCGCAGTTGCGCCAAGGCAATCCGCACAGCCTTGCTCACCTCGGGGTCGCTGTCGGCCTCGGCGGCCTGCAGCACCGACAAAGCACGCGCCTGGCC  <  NC_002947/262523‑262377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.