New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 316954 | 60 (0.920) | 4 (0.060) | 3/252 | NT | 6.5% | coding (977/1407 nt) | dctD‑I | C4‑dicarboxylate transport transcriptional regulator |
? | NC_002947 | = 316978 | 57 (0.920) | coding (953/1407 nt) | dctD‑I | C4‑dicarboxylate transport transcriptional regulator |
CAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTGGAACAACACCAATATGTCGTCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/316837‑316954 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgcTGCGTATTCCGCCACTGCGTGAACGCGGCGACGACATATTGGTGTTGTTCCAGCATTTCGCCGATGCTGCCAGCCAACGTCATGGCCTGTCGCCGCATGCGCTGCAACCCGCGCAACGCGCCCTGCTGCTGCGTCATGACTGGCCAG < NC_002947/316978‑316832 CAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTGGAACAACACCAATATGTCGTCGCCGCTGCGTATTCCGCCACTGCGTGAACGCGGCGA < 6:195703/149‑1 AGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTGGAACAACACCAATATGTCGTCGCCGCTGCGTATTCCGCCACTGCGTGAACGCGGCGAC < 4:374236/149‑1 GCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTGGAACAACACCAATATGTCGTCGCCGCTGCGTATTCCGCCACTGCGTGAACGCGGCGA > 7:342860/1‑139 GCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTGGAACAACACCAATATGTCGTCGCCGCTGCGTATTCCGCCACTGCGTGAACGCGGCGA < 8:342860/139‑1 CGCCGCTGCGTATTCCGCCACTGCGTGAACGCGGCGACGACATATTGGTGTTGTTCCAGCATTTCGCCGATGCTGCCAGCCAACGTCATGGCCTGTCGCCGCATGCGCTGCAACCCGCGCAACGCGCCCTGCTGCTGCGTCATGACTGG < 4:175438/149‑1 CCGCTGCGTATTCCGCCACTGCGTGAACGCGGCGACGACATATTGGTGTTGTTCCAGCATTTCGCCGATGCTGCCAGCCAACGTCATGGCCTGTCGCCGCATGCGCTGCAACCCGCGCAACGCGCCCTGTTGCTGCGTCATGACTGGC > 2:17300/1‑148 CGCTGCGTATTCCGCCACTGCGTGAACGCGGCGACGACATATTGGTGTTGTTCCAGCATTTCGCCGATGCTGCCAGCCAACGTCATGGCCTGTCGCCGCATGCGCTGCAACCCGCGCAACGCGCCCTGCTGCTGCGTCATGACTGGC > 1:162142/1‑147 CGCTGAGTATTCCGCCACTGCGTGAACGCGGCGACGACATATTGGTGTTGTTCCAGCATTTCGCCGATGCTGCCAGCCAACGTCATGGCCTGTCGCCGCATGCGCTGCAACCCGCGCAACGCGCCCTGCTGCTGCGTCATGACTGGC > 2:378629/1‑147 GCTGCGTATTCCGCCACTGCGTGAACGCGGCGACGACATATTGGTGTTGTGCCAGCATTTCGCCGATGCTGCCAGCCAACGTCATGGCCTGTCGCCGCATGCGCTGCAACCCGCGCAACGCGCCCTGCTGCTGCGTCATGACTGGCCAG < 5:295646/149‑1 CAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTGGAACAACACCAATATGTCGTCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/316837‑316954 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgcTGCGTATTCCGCCACTGCGTGAACGCGGCGACGACATATTGGTGTTGTTCCAGCATTTCGCCGATGCTGCCAGCCAACGTCATGGCCTGTCGCCGCATGCGCTGCAACCCGCGCAACGCGCCCTGCTGCTGCGTCATGACTGGCCAG < NC_002947/316978‑316832 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |