New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 492829	57 (0.880)	3 (0.050)	3/252	NT	5.3%	coding (279/1020 nt)	PP_0405	hypothetical protein
	?	NC_002947	= 492862	52 (0.840)					coding (312/1020 nt)	PP_0405	hypothetical protein

CAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCGCCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTGACGTACATGTGCCGCTGATCCACGCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/492679‑492829 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccagATCCCCAAGCAGCAAAAAGCCGCGTTCCAGGTCCTGGGCGTGGATCAGCGGCACATGTACGTCAGCGCTGGCCAGCAGGTGGTCGATGGCGACGAACGGTCGGCAGTTCTCCTGCGGGGGGGGCGCATCCATGATCACGAAACTGTGG  <  NC_002947/492862‑492715                                                                                                                                                                                                                                                                                                             CAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCGCCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTGACGTACATGTGCCGCTGATCCACGCC                                                                                                                                                         >  5:16335/1‑148  AGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCGCCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTGACGTACATGTGCCGCTGATCCACGCCCA                                                                                                                                                       <  3:27469/149‑1                                           TTTCGTGATCATGGATGCGCCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCTCTGACGTACATGTGCCGCTGATCCACGCCCAGATCCCCAAGCAGCAAAAAGCCGCGTTCCAGGTCCTGGGCG                                                                                                              <  5:189876/149‑1                                                    CATGGATGCGCCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTGACGTACATGTGCCGCTGATCCACGCCCAGATCCCCAAGCAGCAAAAAGCCGCGTTCCAGGTCCTGGGCGTGG                                                                                                           <  1:391049/143‑1                                                    CATGGATGCGCCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTGACGTACATGTGCCGCTGATCCACGCCCAGATCCCCAAGCAGCAAAAAGCCGCGTTCCAGGTCCTGGGCGTGG                                                                                                           >  2:391049/1‑143                                                                                                                                                    CCAGATCCCCAAGCAGCAAAAAGCCGCGTTCCAGGTCCTGGGCGTGGATCAGCGGCACATGTACGTCAGCGCTGGCCAGCAGGTGGTCGATGGCGACGAACGGTCGGCAGTTCTCCTGCGGGGGGGGCGCATCCATGATCACGAAACTG     >  4:368114/1‑149                                                                                                                                                     CAGATCCCCAAGCAGCAAAAAGCCGCGTTCCAGGTCCTGGGCGTGGATCAGCGGCACATGTACGTCAGCGCTGGCCAGCAGGTGGTCGATGGCGACGAACGGTCGGCAGTTCTCCTGCGGGGGGGGCGCATCCATGATCACGAAACTGT    <  6:33476/149‑1                                                                                                                                                       GATCCCCAAGCAGCAAAAAGCCGCGTTCCAGGTCCTGGGCGTGGATCAGCGGCACATGTACGTCAGCGCTGGCCAGCAGGTGGTCGATGGCGACGAACGGTCGGCAGTTCTCCTGCGGGGGGGGCGCATCCATGATCACGAAACTGTGG  >  1:377624/1‑149                                                                                                                                                       GATCCCCAAGCAGCAAAAAGCCGCGTTCCAGGAACTGGGCGTGGATCAGCGGCACATGTACGTCAGCGCTGGCCAGCAGGTGGTCGATGGCGAAGAACGGTCGGAAGTTCTCCTGCGGTGGGGGCGCATCCATGATCACGAAACTGTGG  >  4:354443/1‑149                                                                                                                                                                                                                                                                                                             CAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCGCCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTGACGTACATGTGCCGCTGATCCACGCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/492679‑492829 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccagATCCCCAAGCAGCAAAAAGCCGCGTTCCAGGTCCTGGGCGTGGATCAGCGGCACATGTACGTCAGCGCTGGCCAGCAGGTGGTCGATGGCGACGAACGGTCGGCAGTTCTCCTGCGGGGGGGGCGCATCCATGATCACGAAACTGTGG  <  NC_002947/492862‑492715

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.