New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	565405 =	60 (0.920)	4 (0.060)	4/256	NT	6.3%	coding (885/1440 nt)	katA	catalase
	?	NC_002947	565446 =	60 (0.950)					coding (926/1440 nt)	katA	catalase

TCCCCACGCGATAGCGGTGCGCGTCGGCGTAGGCGAATACACGGCCTTGCAGCATGCGGTCCGGCGAAAGACCGACGCCGGGCACCATATTGCTCGGCCCGAACG‑CGGCCTGCTCGACCTCCGCAAAATAGTTGAGCGGGTTACGGTTGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/565556‑565405 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGCATGCTGCAAGGCCGTGTATTCGCCTACGCCGACGCGCACCGCTATCGCGTGGGGACCAACCACCAGCAATTGCCAGTCAACGCGCCACGC  >  NC_002947/565446‑565591                                                                                                                                                                                                                                                                                                             TCCCCACGCGATAGCGGTGCGCGTCGGCGTAGGCGAATACACGGCCTTGCAGCATGCGGTCCGGCGAAAGACCGACGCCGGGCACCATATTGCTCGGCCCGAACG‑CGGCCTGCTCGACCTCCGCAAAATAGTTGAGCGGGTTACGGTTG                                                                                                                                                       <  8:249238/149‑1  CCCCACGCGATAGCGGTGCGCGTCGGCGTAGGCGAATACACGGCCTTGCAGCATGCGGTCCGGCGAAAGACCGACGCCGGGCACCATATTGCTCGGCCCGAACG‑CGGCCTGCTCGACCTCCGCAAAATAGTTGAGCGGGTTACGGTTGA                                                                                                                                                      <  5:272755/149‑1    CCACGCGATAGCGGTGCGCGTCGGCGTAGGCGAATACACGGCCTTGCAGCATGCGGTCCGGCGAAAGACCGACGCCGGGCACCATATTGCTCGGCCCGAACGTCGGCCTGCTCGACCTCCGCAAAATAGTTGAGCGGGTTACGGTTGAG                                                                                                                                                     <  1:89406/149‑1    CCACGCGATAGCGGTGCGCGTCGGCGTAGGCGAATACACGGCCTTGCAGCATGCGGTCCGGCGAAAGACCGACGCCGGGCACCATATTGCTCGGCCCGAACG‑CGGCCTGCTCGACCTCCGCAAAATAGTTGAGCGGGTTACGGTTGAGC                                                                                                                                                    >  8:228108/1‑149                                                                                                              CCTGCTCGACCTCCGCAAAATAGTTGAGCGGGTTACGGTTGAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGCATGCTGCAAGGCCGTGTATTCGCCTACGCCGACGCGCACCGCTATCGCG                                           >  2:241447/1‑149                                                                                                                TGCTCGACCTCCGCAAAATAGTTGAGCGGGTTACGGTTGAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCATCGG                                                                                                            >  3:117899/1‑82                                                                                                                TGCTCGACCTCCGCAAAATAGTTGAGCGGGTTACGGTTGAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCATCGG                                                                                                            <  4:117899/82‑1                                                                                                                 GCTCGACCTCCGCAAAATAGTTGAGCGG‑‑‑A‑GGTCGAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGCATGCTGCAAGGCCGTGTATTCGCCTACGCCGACGCGCACCGCTATCGCGTGGGGAC                                    >  8:156715/1‑149                                                                                                                                                      GAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGCATGCTGCAAGGCCGTGTATTCGCCTACGCCGACGCGCACCGCTATCGCGTGGGGACCAACCACCAGCAATT                     >  7:187071/1‑131                                                                                                                                                      GAGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGCATGCTGCAAGGCCGTGTATTCGCCTACGCCGACGCGCACCGCTATCGCGTGGGGACCAACCACCAGCAATT                     <  8:187071/131‑1                                                                                                                                                       AGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGCATGCTGCAAGGCCGTGTATTCGCCTACGCCGACGCGCACCGCTATCGCGTGGGGACCAACCACCAGCAATTGCCAGTCAACGCGCCACGC  >  6:351026/1‑149                                                                                                                                                       AGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGCATGCTGCAAGGCCGTGTATTCGCCTACGCCGACGCGCACCGCTATCGCGTGGGGACCAACCACCAGCAATTGCCAGTCAACGCGCCACGC  >  8:130825/1‑149                                                                                                                                                       AGCAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGCATGCTGCAAGGCCGTGTATTCGCCTACGCCGACGCGCACCGCTATCGCGTGGGGACCAACCACCAGCAATTGCCAGTCAACGCGCCACGC  >  8:159624/1‑149                                                                                                                                                                                                                                                                                                             TCCCCACGCGATAGCGGTGCGCGTCGGCGTAGGCGAATACACGGCCTTGCAGCATGCGGTCCGGCGAAAGACCGACGCCGGGCACCATATTGCTCGGCCCGAACG‑CGGCCTGCTCGACCTCCGCAAAATAGTTGAGCGGGTTACGGTTGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/565556‑565405 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcAGGCCGCGTTCGGGCCGAGCAATATGGTGCCCGGCGTCGGTCTTTCGCCGGACCGCATGCTGCAAGGCCGTGTATTCGCCTACGCCGACGCGCACCGCTATCGCGTGGGGACCAACCACCAGCAATTGCCAGTCAACGCGCCACGC  >  NC_002947/565446‑565591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.