New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	615051 =	70 (1.080)	4 (0.060)	4/252	NT	5.8%	coding (196/888 nt)	ispA	farnesyl diphosphate synthase
	?	NC_002947	615099 =	64 (1.030)					coding (148/888 nt)	ispA	farnesyl diphosphate synthase

GCAGCCCTCGAACCGCTGTTCATCGCCCCGAGCAAAGAGCTGGAACGCCTTTACGCCGCCATGCGCTACAGCGTGATGAACGGCGGCAAACGCGTGCGCCCGTTGCTGGCCTACGCGGCCTGCGAAGCCTTGGGCGCCCCGGCCGAACAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/615204‑615051 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccaGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCAT  >  NC_002947/615099‑615246                                                                                                                                                                                                                                                                                                                GCAGCCCTCGAACCGCTGTTCATCGCCCCGAGCAAAGAGCTGGAACGCCTTTACGCCGCCATGCGCTACAGCGTGATGAACGGCGGCAAACGCGTGCGCCCGTTGCTGGCCTACGCGGCCTGCGAAGCCTTGGGCGCCCCGGCCGAACA                                                                                                                                                           <  6:354044/149‑1  CAGCCCTCGAACCGCTGTTCATCGCCCCGAGCAAAGAGCTGGAACGCCTTTACGCCGCCATGCGCTACAGCGTGATGAACGGCGGCAAACGCGTGCGCCCGTTGCTGGCCTACGCGGCCTGCGAAGCCTTGGGCGCCCCGGCCGAACAG                                                                                                                                                          <  1:138578/149‑1  CAGCCCTCGAACCGCTGTTCATCGCCCCGAGCAAAGAGCTGGAACGCCTTTACGCCGCCATGCGCTACAGCGTGATGAACGGCGGCAAACGCGTGCGCCCGTTGCTGGCCTACGCGGCCTGCGAAGCCTTGGGCGCCCCGGCCGAACAG                                                                                                                                                          <  2:52757/149‑1    GCCCTCGAACCGCTGTTCATCGCCCCGAGCAATGAGCTGGAACGCCTTTACGGCGCCATGCGCTACAGCGTGATGAACGGCGGCAAAGGCGTTCGCGCGTTGCTGGCCTACGCGGCCTGCGATGCCTTGGGCGCCCCGGCCGAACAGGC                                                                                                                                                        <  2:23735/149‑1    GCCCTCGAACCGCTGTTCATCGCCCCGAGCAAAGAGCTGGAACGCCTTTACGCCGCCATGCGCTACAGCGTGATGAACGGCGGCAAACGCGTGCGCCCGTTGCTGGCCTACGCGGCCTGCGAAGCCTTGGGCGCCCCGGCCGAACAGGC                                                                                                                                                        <  2:89281/149‑1    GCCCTCGAACCGCTGTTCATCGCCCCGAGCAAAGAGCTGGAACGCCTTTACGCCGCCATGCGCTACAGCGTGATGAACGGCGGCAAACGCGTGCGCCCGTTGCTGGCCTACGCGGCCTGCGAAGCCTTGGGCGCCCCGGCCGAACAGGC                                                                                                                                                        <  7:365652/149‑1                                                                                                       TTGCTGGCCTACGCGGCCTGCGAAGCCTTGGGCGCCCCGGCCGAACAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTC                                                     >  2:14830/1‑149                                                                                                          CTGGCCTACGCGGCCTGCGAAGCCTTGGGCGCCCCGGCCGAACAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGCTGTAGTGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAG                                                  >  4:17899/1‑149                                                                                                           TGGCCTACGCGGCCTGCGAAGCCTTGGGCGCCCCGGCCGAACAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGG                                                 >  4:399810/1‑149                                                                                                                                           CCGGCCGAACAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTG                 <  3:399810/149‑1                                                                                                                                                       GCCAGCAACGGGCGCCCGCGTTTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTGTGCTCGGGGCGATGAACAGCGGGTCGAGGGCTGCGTCGACGCGCGCCTGGCACCTGGCCTGGTAGGTGCCAAT     >  5:368056/1‑149                                                                                                                                                        CCAGCATCGGGCGCTCGCGTTTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATC    <  6:329978/149‑1                                                                                                                                                          AGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCAT  >  1:49945/1‑149                                                                                                                                                                                                                                                                                                                GCAGCCCTCGAACCGCTGTTCATCGCCCCGAGCAAAGAGCTGGAACGCCTTTACGCCGCCATGCGCTACAGCGTGATGAACGGCGGCAAACGCGTGCGCCCGTTGCTGGCCTACGCGGCCTGCGAAGCCTTGGGCGCCCCGGCCGAACAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/615204‑615051 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccaGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCAT  >  NC_002947/615099‑615246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.