| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 741869 | NA (NA) | 8 (0.130) | 5/252 | NT | NA | intergenic (+469/‑31) | PP_t12/PP_0635 | tRNA‑Thr/group II intron‑encoding maturase |
| ? | NC_002947 | = 741902 | NA (NA) | coding (3/1422 nt) | PP_0635 | group II intron‑encoding maturase | |||||
GCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/741717‑741869‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcggCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCCT < NC_002947/741902‑741755 GCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTATTAAGTG > 4:28410/1‑149GCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGT < 6:403537/148‑1 CACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTG < 7:183626/148‑1 CACGGAACGCTGTGACGTAGATACGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGG > 8:38086/1‑149 ACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGC > 5:286546/1‑149 ACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGC < 8:217153/149‑1 ACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGC > 3:125633/1‑149 CGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCG > 7:20528/1‑149 CGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCG < 6:203461/149‑1 CGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCG < 6:406318/149‑1 CGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCAGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGCCGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCG > 7:371230/1‑149 GGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGG > 8:195539/1‑149 GGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGG < 4:393720/149‑1 TCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGCATAACCTGTTCGGCCCT > 3:248657/1‑149 CCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCG < 7:281578/129‑1 CCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCG > 8:281578/1‑129 ATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCG > 5:249061/1‑149 GGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCA < 6:249061/149‑1 GGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGGCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCA < 8:82954/149‑1 GTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCAC < 7:327547/149‑1 GTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCAC < 4:248657/149‑1 GAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTAC < 6:119507/149‑1 GAATTACCCTGGGAGATCTGTACGCTTGCCACTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTAC < 1:160167/149‑1 TTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGG < 3:268455/78‑1 TTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGG > 4:268455/1‑78 TGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACC > 1:160051/1‑149 TGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACC > 3:267088/1‑149 TGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTACGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACC > 5:322444/1‑149 GCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTT > 8:20528/1‑149 GCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCT < 4:166465/148‑1 GCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATC > 5:293682/1‑125 GCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATC < 6:293682/125‑1 GCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATATCCCAGGGTAATTCGCTCGACCTa > 2:397429/1‑148 GCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCG > 6:231531/1‑99 GCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCG < 5:231531/99‑1 CGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTC < 3:80906/149‑1 GGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCC < 5:108567/149‑1 GGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCC < 1:201569/149‑1 GGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCC > 6:286546/1‑149 GGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCC < 5:102805/149‑1 GGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCA < 8:144216/111‑1 GGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCA > 7:144216/1‑111 GCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCC > 1:66399/1‑149 GCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCCT > 1:354612/1‑149 GCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCCT > 1:295341/1‑149 GCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCAACCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCCT > 4:15309/1‑149 GCAAAACCTGTTCGGCCCTTGCTGGCGCGGTTAACC‑GCCACTTACTACGGCTACGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGAAGCACAATCCCAAACGTACAGATCACCCAGGGTAATTCGCGCGAGCTTag > 6:235964/1‑146 GCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/741717‑741869‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcggCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACC‑GCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCCT < NC_002947/741902‑741755 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |