| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 742597 = | NA (NA) | 5 (0.080) | 4/258 | NT | NA | coding (698/1422 nt) | PP_0635 | group II intron‑encoding maturase |
| ? | NC_002947 | 742657 = | NA (NA) | coding (758/1422 nt) | PP_0635 | group II intron‑encoding maturase | |||||
CTGCGTACATAGATGTTCGCATCATCGGCATAACGTACGAAGCGATGGCCCCGCCGCTCCAGCTCGCGGTCGAGTTCGTCGAGCAGGATATTCGACAGCAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/742747‑742597‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCT > NC_002947/742657‑742804 CTGCGTACATAGATGTTCGCATCATCGGCATAACGTACGAAGCGATGGCCCCGCCGCTCCAGCTCGCGGTCGAGTTCGTCGAGCAGGATATTCGACAGCAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGAC < 1:168631/149‑1CTGCGTACATAGATGTTCGCATCATCGGCATAACGTACGAAGCGATGGCCCCGCCGCTCCAGCTCGCGGTCGAGTTCGTCGAGCAGGATATTCGACAGCAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGAC < 1:280656/149‑1CTGCGTACATAGATGTTCGCATCATCGGCATAACGTACGAAGCGATGGCCCCGCCGCTCCAGCTCGCGGTCGAGTTCGTCGAGCAGGATATTCGACAGCAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGAC < 6:26511/149‑1CTGCGTACATAGATGTTCGCATCATCGGCATAACGTACGAAGCGATGGCCCCGCCGCTCCAGCTCGCGGTCGAGTTCGTCGAGCAGGATATTCGACAGCAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGAC < 7:35307/149‑1CTGCGTACATAGATGTTCGCATCATCGGCATAACGTACGAAGCGATGGCCCCGCCGCTCCAGCTCGCGGTCGAGTTCGTCGAGCAGGATATTCGACAGCAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGAC < 6:42064/149‑1CTGCGTACATAGATGTTCGCATCATCGGCATAACGTACGAAGCGATGGCCCCGCCGCTCCAGCTCGCGGTCGAGTTCGTCGAGCAGGATATTCGACAGCAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGAC < 1:35571/149‑1 TGCGTACATAGATGTTCGCATCATCGGCATAACGTACGAAGCGATGGCCCCGCCGCTCCAGCTCGCGGTCGAGTTCGTCGAGCAGGATATTCGACAGCAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGAC > 3:207759/1‑148 TGCGTACATAGATGTTCGCATCATCGGCATAACGTACGAAGCGATGGCCCCGCCGCTCCAGCTCGCGGTCGAGTTCGTCGAGCAGGATATTCGACAGCAAAGGCGAAAGCGGGCCGCCTGGCGGGGTCACCTCCTGCCGTGGGCTGACG > 8:319354/1‑149 CGTACATAGATGTTCGCATCATCGGCATAACGTACGAAGCGATGGCCCCGCCGCTCCAGCTCGCGGTCGAGTTCGTCGAGCAGGATATTCGACAGCAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGA > 3:17271/1‑148 CGTACATAGATGTTCGCATCATCGGCATAACGTACGAAGCGATGGCCCCGCCGCTCCAGCTCGCGGTCGAGTTCGTCGAGCAGGATATTCGACAGCAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGAC < 7:148337/146‑1 ATGTTCGCATCATCGGCATAACGTACGAAGCGATGGCCCCGCCGCTCCAGCTCGCGGTCGAGTTCGTCGAGCAGGATATTCGACAGCAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGAC < 7:263045/137‑1 ATGTTCGCATCATCGGCATAACGTACGAAGCGATGGCCCCGCCGCTCCAGCTCGCGGTCGAGTTCGTCGAGCAGGATATTCGACAGCAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGAC > 8:263045/1‑137 ATCATCGGCATAACGTACGAAGCGATGGCCCCGCCGCTCCAGCTCGCGGTCGAGTTCGTCGAGCAGGATATTCGACAGCAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGAC < 7:136170/129‑1 ATCATCGGCATAACGTACGAAGCGATGGCCCCGCCGCTCCAGCTCGCGGTCGAGTTCGTCGAGCAGGATATTCGACAGCAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGAC > 8:136170/1‑129 GAAGCGATGGCCCCGCCGCTCCAGCTCGCGGTCGAGTTCGTCGAGCAGGATATTCGACAGCAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGAC > 1:345304/1‑111 GAAGCGATGGCCCCGCCGCTCCAGCTCGCGGTCGAGTTCGTCGAGCAGGATATTCGACAGCAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGAC < 2:345304/111‑1 GGATATTCGACAGCAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTAT > 6:403565/1‑149 GATATTCGACAGCAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATG > 5:395840/1‑149 TTCGACAGCAACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACG > 3:367977/1‑149 ACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGG < 6:395840/149‑1 TGGGCTGACGAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGA < 5:403565/149‑1 GAATATCCTGCTCGCCGCACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTCCGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCCGCGTCGAGCGCGTCCGGAGAGAACGac > 8:112433/1‑147 GAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTC < 1:203420/149‑1 GAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTC > 1:296682/1‑149 GAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTC > 6:375756/1‑149 GAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTC > 1:63058/1‑149 GAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTC > 2:141337/1‑149 GAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGT < 5:379198/148‑1 GAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGT < 1:336347/148‑1 GAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGT < 1:369643/148‑1 GAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGT < 2:300851/148‑1 GAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGT < 2:35886/148‑1 GAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTACGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTC > 8:187492/1‑149 AATTTCCTGCTCGACGAACTCGACCGGGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTTTGCCGATGATGCGAAGATCTATGTACGCAGTCCCCGGGCCTGCGAACGGGTGTTGGTCAGCGTCGAGGGCTTCCTGAGAGAACGTCT < 8:113843/149‑1 AATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTTCGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCT < 1:320914/149‑1 AATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGGACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCT < 6:352981/149‑1 AATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCT > 7:158063/1‑149 AATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGT < 3:252406/147‑1 AATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGT > 4:252406/1‑147 AATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGT < 6:52233/113‑1 AATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGT > 5:52233/1‑113 CTGCGTACATAGATGTTCGCATCATCGGCATAACGTACGAAGCGATGGCCCCGCCGCTCCAGCTCGCGGTCGAGTTCGTCGAGCAGGATATTCGACAGCAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/742747‑742597‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCT > NC_002947/742657‑742804 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |