New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 796840	81 (1.240)	4 (0.070)	4/232	NT	5.4%	intergenic (+42/‑148)	PP_0681/PP_0682	hypothetical protein/inner membrane protein
	?	NC_002947	= 796878	68 (1.190)					intergenic (+80/‑110)	PP_0681/PP_0682	hypothetical protein/inner membrane protein

ATGGTTATCAAGTGGCCGATGACCCGCAGATCTGGTGTCTGCATTTGCAGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/796677‑796840 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgcgacacaaggccACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCGGCATTCTTCAGGTCTCAGGATGAAACTGGTAATCCCCCAGGTTGCGACACCGCTCACCATTGATCCGCCGCAACT  <  NC_002947/796878‑796731                                                                                                                                                                                                                                                                                                                          ATGGTTATCAAGTGGCCGATGACCCGCAGATCTGGTGTCTGCATTTGCAGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCA                                                                                                                                                                     >  6:356955/1‑149   GGTTATCCATGGGGCGCTGACCCGCACTAGTGGTGTCTGCATTTGCAGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATC                                                                                                                                                                   <  7:317655/149‑1    GTTATCAAGTGGCCGATGACCCGCAGATCTGGTGTCTGCATTTGCAGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCG                                                                                                                                                                  <  8:99954/149‑1     TTATCAAGTGGCCGATGACCCGCAGATCTGGTGTCTGCATTTGCAGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGC                                                                                                                                                                 >  7:8471/1‑149          AAGTGGCCGATGACCCGCAGATCTGGTGTCTGCATTTGCAGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACA                                                                                                                                                             >  2:165275/1‑148           AGTGGCCGATGACCCGCAGATCTGGTGTCTGCATTTGCAGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACAC                                                                                                                                                            >  7:381340/1‑148               GCCGATGACCCGCAGATCTGGTGTCTGCATTTGCAGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGG                                                                                                                                                        <  2:120281/148‑1                CCGATGACCCGCAGATCTGGTGTCTGCATTTGCAGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCC                                                                                                                                                      >  6:72907/1‑149                                               GCAGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCACACT‑CCACAGCAAGCCGATGCTGTACCTG                                                                                                                       <  6:309690/148‑1                                                   GCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGG                                                                                                                   <  6:311663/149‑1                                                              GCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGT                                                                                                        <  2:157227/149‑1                                                                         GTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGACTGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCACACTCCCACAGCAAGCCGACGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGATGG                                                                                              <  5:324309/148‑1                                                                                                                                                 ccggATCGCGACCCAACGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCGGCATTCTTCAGGGCTCAGGATGAAACTGGTAATCCCCCAGGTTGCGACACCGCTCA                     <  8:119432/145‑1                                                                                                                                                    gagCGCGACACAAGGCCACACTCCCACAGCAAGCCGAGGCTGTACCTGGGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCGGCATTCTTCAGGTCTCAGGATGAAACTGGTAATCCCCCAGGTTGCGACACCGCTCACCA                  <  4:401274/146‑1                                                                                                                                                        GCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCGGCATTCTTCAGGTCTCAGGATGAAACTGGTAATCCCCCAGGTTGCGACACCGCTCACCATTGA              >  7:269742/1‑149                                                                                                                                                         CGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCGGCATTCTTCAGGTCTCAGGATGAAACTGGTAATCCCCCAGGTTGCGCCACCGCTCACCATTGAT             >  3:65378/1‑149                                                                                                                                                         CGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCGGCATTCTTCAGGTCTCAGGATGAAACTGGTAATCCCCCAGGTTGCGACACCGCTCACCATTGAT             >  6:341569/1‑149                                                                                                                                                         CGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCGGCATTCTTCAGGTCTCAGGATGAAACTGGTAATCCCCCAGGTTGCGACACCGCTCAC                    <  4:126889/142‑1                                                                                                                                                         CGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCGGCATTCTTCAGGTCTCAGGATGAAACTGGTAATCCCCCAGGTTGCGACACCGCTCAC                    >  3:126889/1‑142                                                                                                                                                              CAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCGGCATTCTTCAGGTCTCAGGATGAAACTGGTAATCCCCCAGGTTGCGACACCGCTCACCATTGATCCGCC        <  6:310820/149‑1                                                                                                                                                              CAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCGGCATTCTTCAGGTCTCAGGATGAAACTGGTAATCCCACAGGTTGCGACACCGCTCACCATTGATCCGCC        <  3:232037/149‑1                                                                                                                                                               AAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCGGCATTCTTCAGGTCTCAGGATGAAACTGGTAATCCCCCAGGTTGCGACACCGCTCACCATTGATCCGCCG       >  8:263571/1‑149                                                                                                                                                                acGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCGGCATTCTTCAGGTCTCAGGATGAAACTGGTAATCCACCAGCTTGCGACACCGCTCACCATTGATCCGCCG       >  4:164753/3‑148                                                                                                                                                                  GCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCGGCATTCTTCAGGTCTCAGGATGAAACTGGTAATCCCCCAGGTTGCGACACCGCTCACCATTGATCCGCCGCAA    >  3:113716/1‑149                                                                                                                                                                    CACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCGGCATTCTTCAGGTCTCAGGATGAAACTGGTAATCCCCCAGGTTGCGACACCGCTCACCATTGATCCGCCGCAACT  >  5:264416/1‑149                                                                                                                                                                                                                                                                                                                          ATGGTTATCAAGTGGCCGATGACCCGCAGATCTGGTGTCTGCATTTGCAGGCGCAGTTGCGGCGGATCAATGGTGAGCGGTGTCGCAACCTGGGGGATTACCAGTTTCATCCTGAGACCTGAAGAATGCCGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/796677‑796840 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgcgacacaaggccACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCGGCATTCTTCAGGTCTCAGGATGAAACTGGTAATCCCCCAGGTTGCGACACCGCTCACCATTGATCCGCCGCAACT  <  NC_002947/796878‑796731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.