New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1257367	61 (0.940)	5 (0.080)	5/248	NT	8.0%	intergenic (‑53/‑91)	PP_mr14/dcd	cspA regulatory region/deoxycytidine triphosphate deaminase
	?	NC_002947	= 1257394	57 (0.930)					intergenic (‑80/‑64)	PP_mr14/dcd	cspA regulatory region/deoxycytidine triphosphate deaminase

GATGGGCCGATCAGGATCGTGCATCAAACTAGAGATTCTCGGTGTCACGTGCAGCACAGTGGCAACACCTTACCCCACTTTCCGCAACCTGCCAATGGTCAGAAGACGCTTTAGGCAAATTCGGATCGGCGGCGGCTGCAGCCCCCACCCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1257213‑1257367 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggcgcCCAGGTTAAAGTTCCATCCCTCATCCCGCGCCGGGTGGGGGCTGCAGCCGCCGCCGATCCGAATTTGCCTAAAGCGTCTTCTGACCATTGGCAGGTTGCGGAAAGTGGGGTAAGGTGTTGCCACTGTGCTGCACGTGACACCGAG  <  NC_002947/1257394‑1257250                                                                                                                                                                                                                                                                                                              GATGGGCCGATCAGGATCGTGCATCAAACTAGAGATTCTCGGTGTCACGTGCAGCACAGTGGCAACACCTTACCCCACTTTCCGCAACCTGCCAATGGTCAGAAGACGCTTTAGGCAAATTCGGATCGGCGGCGGCTGCAGCCCCCACC                                                                                                                                                         >  1:222931/1‑149  aagcgcaGATCAGGATCGTGCATAAAACTAGAGATACTAGGTGTCACCTGAAGCACAGTGGCAACACCTTACCCCACTTTCCCCAACATGCCAATCCTCAGAAGACGCTTTAGGCAAATTCGGATCGGCGCAGGCTGCAGCCCCCACCC                                                                                                                                                        <  1:268128/142‑1  ATGGGCCGATCTGGATCGTGCATCAAACTAGAGATTCTCGGTGTCACGTGCAGCACAGTGGCAACACCTTACCCCACTTTCCTCAACCTGCCAATGGTCATAAGACGCTTTAGGCAAATTCGGATCGGCGGCGGCTGCAGCCCCCACCC                                                                                                                                                        <  1:262183/149‑1     GGCCGATCAGGATCGTGCATCAAACTAGAGATTCTCGGTGTCACGTGCAGCACAGTGGCAACACCTTACCCCACTTTCCGCAACCTGCCAATGGTCAGAAGACGCTTTAGGCAAATTCGGATCGGCGGCGGCTGCAGCCCCCACCCGG                                                                                                                                                      <  1:220295/148‑1      GCCGATCAGGATCGTGCATCAAACTAGAGATTCTCGGTGTCACGTGCAGCACAGTGGCAACACCTTACCCCACTTTCCGCAACCTGCCAATGGTCAGAAGACGCTTTAGGCAAATTCGGATCGGCGGCGGCTGCAGACCCCACCCGGCG                                                                                                                                                    >  6:3118/1‑149                           AACTAGAGATTCTCGGTGTCACGTGCAGCACAGTGGCAACACCTTACCCCACTTTCCGCAACCTGCCAATGGTCAGAAGACGCTTTAGGCAAATTCGGATCGGCGGCGGCTGCAGCCCCCACCCGGCGCCCAGGTTAAAGTTCCATCCC                                                                                                                               >  8:55381/1‑149                                          GTGTCACGTGCAGCACAGTGGCAACACCTTACCCCACTTTCCGCAACCTGCCAATGGTCAGAAGACGCTTTAGGCAAATTCGGATCGGCGGCGGCTGCAGCCCCCACCCGGCGCCCAGGTTAAAGTTCCATCCCTCATCCCGCGCCGGG                                                                                                                <  8:23298/149‑1                                             TCACGTGCAGCACAGTGGCAACACCTTACCCCACTTTCCGCAACCTGCCAATGGTCAGAAGACGCTTTAGGCAAATTCGGATCGGCGGCGGCTGCAGCCCCCACCCGGCGCCCAGGTTAAAGTTCCATCCCTCATCCCGCGCCGGGTGG                                                                                                             <  7:55381/149‑1                                                     AGCACAGTGGCAACACCTTACCCCACTTTCCGCAACCTGCCAATGGTCAGAAGACGCTTTAGGCAAATTCGGATCGGCGGCGGCTGCAGCCCCCACCCGGCGCCCAGGTTAAAGTTCCATCCCTCATCCCGCGCCGG                                                                                                                 >  1:220899/1‑137                                                     AGCACAGTGGCAACACCTTACCCCACTTTCCGCAACCTGCCAATGGTCAGAAGACGCTTTAGGCAAATTCGGATCGGCGGCGGCTGCAGCCCCCACCCGGCGCCCAGGTTAAAGTTCCATCCCTCATCCCGCGCCGG                                                                                                                 <  2:220899/137‑1                                                                                                                                                      CGGCGCCCAGGTTAAAGTTCCATCCCTCATCCCGCGCCGGGTGGGGGCTGCAGCCGCCGCCGATCCGAATTTGCCTAAAGCGTCTTCTGACCATTGGCAGGTTGCGGAAAGTGGGGTAAGGTGTTGCCACTGTGCTGCACGTGACACC     >  1:86689/1‑148                                                                                                                                                       GGCGCCCAGGTTAAAGTTCCATCCCTCATCCCGCGCCGGGTGGGGGCTGCAGCCGCCGCCGATCCGAATTTGCCTAAAGCGTCTTCTGACCATTGGCAGGTTGCGGAAAGTGGGGTAAGGTGTTGCCACTGTGCTGCACGTGACACCGA   <  3:55473/149‑1                                                                                                                                                        GCGCCCATGTTAAAGTTCCATCCCTCATGCCGCGCCGGGTGGGGGCTGCAGCCGCCGCCGATCCGAATTTGCCTAAAGCGTCTTCTGACCATTGGCAGGTTGCGGAAAGTGGGGTAAGGTGTTGCCACTGTGCTGCACGTGACACCGAG  <  6:330426/149‑1                                                                                                                                                          GCCCAGGTTAAAGTTCCATCCCTCATCCCGCGCCGGGTGGGGGCTGCAGCCGCCGCCGATCCGAATTTGCCTAAAGCGTCTTCTGACCATTGGCAGGTTGCGGAAAGTGGGGTAAGGTGTTGCCACTGTGCTGCACGTGA         >  3:156893/1‑140                                                                                                                                                          GCCCAGGTTAAAGTTCCATCCCTCATCCCGCGCCGGGTGGGGGCTGCAGCCGCCGCCGATCCGAATTTGCCTAAAGCGTCTTCTGACCATTGGCAGGTTGCGGAAAGTGGGGTAAGGTGTTGCCACTGTGCTGCACGTGA         <  4:156893/140‑1                                                                                                                                                                                                                                                                                                              GATGGGCCGATCAGGATCGTGCATCAAACTAGAGATTCTCGGTGTCACGTGCAGCACAGTGGCAACACCTTACCCCACTTTCCGCAACCTGCCAATGGTCAGAAGACGCTTTAGGCAAATTCGGATCGGCGGCGGCTGCAGCCCCCACCCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1257213‑1257367 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggcgcCCAGGTTAAAGTTCCATCCCTCATCCCGCGCCGGGTGGGGGCTGCAGCCGCCGCCGATCCGAATTTGCCTAAAGCGTCTTCTGACCATTGGCAGGTTGCGGAAAGTGGGGTAAGGTGTTGCCACTGTGCTGCACGTGACACCGAG  <  NC_002947/1257394‑1257250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.