New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1257829	77 (1.180)	6 (0.100)	4/244	NT	7.4%	coding (372/567 nt)	dcd	deoxycytidine triphosphate deaminase
	?	NC_002947	= 1257855	78 (1.300)					coding (398/567 nt)	dcd	deoxycytidine triphosphate deaminase

GCTTCGTCGATATCAAGAGCGACGTGTGCATCATCCCGCCAAACTCTTTCGCCCTGGCGCGCACTGTCGAATATTTCCGCATTCCCCGTGACGTGCTGACCATTTGCCTGGGCAAGAGCACCTACGCCCGTTGCGGCATCATCGTCAACGTCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1257675‑1257829 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacgtcacgTGGCCTTCCCACTCGGGCTCGAGCGGCGTGACGTTGACGATGATGCCGCAACGGGC‑GTAGGTGCTCTTGC‑‑CCAGGCAAATGGTCAGCACGTCACGGGGAATGCGGAAATATTCGACAGTGCGCGCCAGGGCGAAAGAGTTTGGCGGGA  <  NC_002947/1257855‑1257708                                                                                                                                                                                                                                                                                                                    GCTTCGTCGATATCAAGAGCGACGTGTGCATCATCCCGCCAAACTCTTTCGCCCTGGCGCGCACTGTCGAATATTTCCGCATTCCCCGTAACGTGCTGACCATTTGCCTGGGCAAGAGCACCTACGCCCGTTGCGGCATCATCGTCAAC                                                                                                                                                               <  6:412137/149‑1    TCGTCGATATCAAGAGCGACGTGTGCATCATCCCGCCAAACTCTTTCGCCCTGGCGCGCACTGTCGAATATTTCCGCATTCCCCGTGACGTGCTGACCATTTGCCTGGGCAAGAGCACCTACGCCCGTTGCGGCATCATCGTCAACGT                                                                                                                                                             >  2:312377/1‑148      GTCGATATCAAGAGCGACGTGTGCATCATCCCGCCAAACTCTTTCGCCCTGGCGCGCACTGTCGAATATTTCCGCATTCCCCGTGACGTGCTGACCATTTGCCTGGGCAAGAGCACCTACGCCCGTTGCGGCATCATCGTCAACGTCAC                                                                                                                                                          >  3:113652/1‑149      GTCGATATCAAGAGCGACGTGTGCATCATCCCGCCAAACTCTTTCGCCCTGGCGCGCACTGTCGAATATTTCCGCATTCCCCGTGACGTGCTGACCATTTGCCTGGGCAAGAGCACCTACGCCCGTTGCGGCATCATCGTCAACGTCA                                                                                                                                                           <  4:205570/148‑1                    CGACGTGTGCATCATCCCGCCAAACTCTTTCGCCCTGGCGCGCACTGTCGAATATTTCCGCATTCCCCGTGACGTGCTGACCATTTGCCTGGGCAAGAGCACCTACGCCCGTTGCGGCATCATCGTCAACGTCACGTGGCCTTCCCACT                                                                                                                                            >  7:156305/1‑149                                         AAACTCTTTCGCCCTGGCGCTCACTGTCGAATATTTCCGCATTCCCCGTGACGTGCTGACCATTTGCCTGGGCAAGAGCACCTACGCCCGTTGCGGCATCATCGTCAACGTCACGTGGCCTTCCCACTCGGGCTCGAGCGGCGTGACGT                                                                                                                       <  7:329782/149‑1                                           ACTCTTTCGCCCTGGCGCGCACTGTCGAATATTTCCGCATTCCCCGTGACGTGCTGACCATTTGCCTGGGCAAGAGCACCTACGCCCGTTGCGGCATCATCGTCAACGTCACGTGGCCTTCCCACTCGGGCTCGAGCGGCGTGACGTTG                                                                                                                     <  2:391119/149‑1                                            CTCTTTCGCCCTGGCGCGCACTGTCGAATATTTCCGCATTCCCCGTGACGTGCTGACCATTTGCCTGGGCAAGAGCACCTACGCCCGTTGCGGCATCATCGTCAACGTCACGTGGCCTTCCCACTCGGGCTCGAGCGGCGTGACGTTGA                                                                                                                    <  8:156305/149‑1                                            CTCTTTCGCCCTGGCGCGCACTGTCGAATATTTCCGCATTCCCCGTGACGTGCTGACCATTTGCCTGGGCAAGAGCACCTACGCCCGTTGCGGCATCATCGTCAACGTCACGTGGCCTTCCCACTCGGGCTCGAGCGGCGTGACGTTGA                                                                                                                    <  6:190273/149‑1                                            CTCTTTCGCCCTGGCGCGCACTGTCGAATATTTCCGCATTCCCCGTGACGTGCTGACCATTTGCCTGGGCAAGAGCACCTACGCCCGTTGCGGCATCATCGCCAACGTCACGTGGCCTTCCCACTCGGGCTCGAGCGGCGTGACGTTGA                                                                                                                    <  2:7904/149‑1                                                                                                                                                  CAACGTCACGTGGCCTTCCCACTCGGGCTCGAGCGGCGTGACGTTGACGATGATGCCGCAACGGGC‑GTAGGTGCTCTTGC‑‑CCAGGCAAATGGTCAGCACGTCACGGGGAATGCGGAAATATTCGACAGTGCGCGCCAGGGCGAAAGAGT           >  2:60015/1‑149                                                                                                                                                  CAACGTCACGTGGCCTTCCCACTCGGGCTCGAGCGGCGTGACGTTGACGATGATGCCGCAACGGGC‑GTAGGTGCTCTTGC‑‑CCAGGCAAATGCTCAGCACGTCACGGGGAATGCGGAAATATTCGACAGTGCGCGCCAGGGCGAAAGAGT           <  1:321544/149‑1                                                                                                                                                  CAACGTCACGTGGCCTTCCCACTCGGGCTCGAGCGGCGTGACGTTGACGATGAGGCCGCAACGGGC‑GTAGGTGCTCTTGC‑‑CCAGGCAAATGTTCAGCACGTCACGGGGAATGCGGAAATATTCGACAGTGCGCGCCAGGGCGAAAGAGT           <  1:316550/149‑1                                                                                                                                                   AACGTCACGTGGCCTTCCCACTCGGGCTCGAGCGGCGTGACGTTGACGATGATGCCGCAACGGGC‑GTAGGTGCTCTTGC‑‑CCAGGCAAATGGTCAGCACGTCACGGGGAATGCGGAAATATTCGACAGTGCGCGCCAGGGCGAAAGAGTT          >  6:215465/1‑149                                                                                                                                                     CGTCACGTGGCCTTCCCACTCGGGCTCGAGCGGCGTGACGTTGACGATGATGCCGCAACGGGC‑GTAGGTGCTCTTGC‑‑CCAGGCAAATGGTCAGCACGTCACGGGGAATGCGGAAATATTCGACAGTGCGCGCCAGGGCGAAAGAGTTTG        <  5:215465/149‑1                                                                                                                                                        CACGTGGCCTTCCCACTCGGGCTCGAGCGGCGTGACGTTGACTATGATGCCGCAACGGTCGGTATGTGCTTTCACCTCCAGGCAAATGGTCAGCACGTCACGGGGAATGCGGAAATATTCGACAGTGCGCGCCAGGGCGAAAGAGTTTG        <  1:330045/149‑1                                                                                                                                                           GTGGCCTTCCCACTCGGGCTCGAGCGGCGTGACGTTGACGATGATGCCGCAACGGGC‑GTAGGTGCTCTTGC‑‑CCAGGCAAATGGTCAGCACGTCACGGGGAATGCGGAAATATTCGACAGTGCGCGCCAGGGCGAAAGA             >  5:317160/1‑138                                                                                                                                                           GTGGCCTTCCCACTCGGGCTCGAGCGGCGTGACGTTGACGATGATGCCGCAACGGGC‑GTAGGTGCTCTTGC‑‑CCAGGCAAATGGTCAGCACGTCACGGGGAATGCGGAAATATTCGACAGTGCGCGCCAGGGCGAAAGA             <  6:317160/138‑1                                                                                                                                                           GTGGCCTTCCCACTCGGGCTCGAGCGGCGTGACGTTGACGATGATGCCGCAACGGGC‑GTAGGTGCTCCTGC‑‑CCAGGCAAATGGTCAGCACGTCACGGGGAATGCGGAAATATTCGACAGTGCGCGCCAGGGCGAAAGAGTTTGGCGGGA  >  1:243904/1‑149                                                                                                                                                                                                                                                                                                                    GCTTCGTCGATATCAAGAGCGACGTGTGCATCATCCCGCCAAACTCTTTCGCCCTGGCGCGCACTGTCGAATATTTCCGCATTCCCCGTGACGTGCTGACCATTTGCCTGGGCAAGAGCACCTACGCCCGTTGCGGCATCATCGTCAACGTCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1257675‑1257829 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacgtcacgTGGCCTTCCCACTCGGGCTCGAGCGGCGTGACGTTGACGATGATGCCGCAACGGGC‑GTAGGTGCTCTTGC‑‑CCAGGCAAATGGTCAGCACGTCACGGGGAATGCGGAAATATTCGACAGTGCGCGCCAGGGCGAAAGAGTTTGGCGGGA  <  NC_002947/1257855‑1257708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.