New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1296790	NA (NA)	4 (0.060)	3/250	NT	NA	intergenic (‑543/‑23)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	= 1296814	NA (NA)					coding (2/1329 nt)	PP_1133	transposase

ACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1296636‑1296790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgccATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCA  <  NC_002947/1296814‑1296667                                                                                                                                                                                                                                                                                                                  ACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCG                                                                                                                                                             >  8:13739/1‑149  CAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGC                                                                                                                                                            >  4:142383/1‑149  CAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGC                                                                                                                                                            <  2:347051/149‑1  CAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGC                                                                                                                                                            <  1:42645/149‑1  CAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGC                                                                                                                                                            <  1:392064/149‑1   AGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCG                                                                                                                                                           >  4:369649/1‑149   AGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCG                                                                                                                                                           >  6:180915/1‑149   AGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCG                                                                                                                                                           >  1:379943/1‑149   AGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCG                                                                                                                                                           >  1:158304/1‑149     AGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCG                                                                                                                                                         <  7:159723/149‑1     AGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCG                                                                                                                                                         >  7:349721/1‑149     AGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCG                                                                                                                                                         >  2:303772/1‑149     AGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCG                                                                                                                                                         >  6:131781/1‑149     AGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCG                                                                                                                                                         >  4:134463/1‑149       ATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCC                                                                                                                                                       <  2:302973/149‑1                                 GCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCC                                                                                                                                                       >  8:192214/1‑123                                 GCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCC                                                                                                                                                       <  7:192214/123‑1                                     ACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCG                                                                                                                         <  7:166036/149‑1                                         GCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCC                                                                                                                                                       <  2:261786/115‑1                                         GCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCC                                                                                                                                                       >  1:261786/1‑115                                         GCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTCAACCCTTTCGCCACCGTGTGCCCCGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGG                                                                                                                     <  3:68101/149‑1                                               GAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGG                                                                                                                     <  7:23204/143‑1                                               GAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGG                                                                                                                     >  8:23204/1‑143                                                                                                                                                     GCGCGCCATTATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACAGGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTTAATCAGCTGATGACTACAGGGACTTC‑ACTCCGATTCCGTGCGGATCACTCTCCTACGCGG         <  6:318691/148‑1                                                                                                                                                     GCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGGG        >  5:193234/1‑149                                                                                                                                                     GCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGGG        >  1:102886/1‑149                                                                                                                                                     GCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGG         <  4:29840/148‑1                                                                                                                                                     GCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGG         <  2:10201/148‑1                                                                                                                                                     GCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGG         <  1:321823/148‑1                                                                                                                                                      CGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCTACGCCGATACCGTGCGGATCACTCTCCTACGCGG         <  1:266030/148‑1                                                                                                                                                      CGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGGGT       <  3:263093/149‑1                                                                                                                                                      CGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGGGT       <  8:9615/149‑1                                                                                                                                                      CGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTAC                                                     <  8:272354/104‑1                                                                                                                                                      CGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTAC                                                     >  7:272354/1‑104                                                                                                                                                       GCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGCTGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGcttg      >  7:267141/1‑145                                                                                                                                                       GCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTC                                                                             >  8:223437/1‑79                                                                                                                                                       GCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTC                                                                             <  7:223437/79‑1                                                                                                                                                         GCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTG    >  6:174793/1‑149                                                                                                                                                         GCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTG    >  2:27372/1‑149                                                                                                                                                         GCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGC                            >  7:269443/1‑125                                                                                                                                                         GCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGC                            <  8:269443/125‑1                                                                                                                                                          CCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGC   <  7:136937/149‑1                                                                                                                                                          CCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGC   <  6:302367/149‑1                                                                                                                                                          CCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGGTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGC   <  2:347168/149‑1                                                                                                                                                           CATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGag    >  8:340768/1‑145                                                                                                                                                           CATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCA  <  7:231811/149‑1                                                                                                                                                           CATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTG    >  7:13739/1‑147                                                                                                                                                           CATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTG    >  6:79471/1‑147                                                                                                                                                           CATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTG    >  4:99262/1‑147                                                                                                                                                           CATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTG    >  3:40169/1‑147                                                                                                                                                           CATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTG    >  1:152121/1‑147                                                                                                                                                           CATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGGCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCTGATCACTCTCCTACGCGGGTGTGCA  <  7:365543/149‑1                                                                                                                                                                                                                                                                                                                  ACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1296636‑1296790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgccATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTC‑ACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCA  <  NC_002947/1296814‑1296667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.