New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 142152660 (0.920)8 (0.130) 8/250 NT 11.4% coding (107/1860 nt) PP_1246 hypothetical protein
?NC_002947 = 1421564 67 (1.090)coding (145/1860 nt) PP_1246 hypothetical protein

TCTGCAAACAAGCCAACGGCACCTGGGAACTGATCTGAGGAACTCCATGAAAAAGCACGCGCTCGCGCTGGCTGTGATCGGCGCTTGTGGTCTGGTACCGCAGGCGTTCGCCCACGAGCTGGCCTTTTCCAAGAAAGACAACATCAAGGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1421374‑1421526
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggtcga‑‑‑‑CCTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTGATGTTGTCTTTCTTGGAAAAGGCCAGCTCGTGGGCGAACGCCTGCGGTACCAGACCACAAGCGCCGATCACAGCCAGCGCGAGCGCGTGCTTTTTCATGGA  <  NC_002947/1421564‑1421417
                                                                                                                                                                                                                                                                                                                 
TCTGCAAACAAGCCAACGGCACCTGGGAACTGATCTGAGCAACTCCATGAAAAAGCACGCGCTCGCGCTGGCTGTGATCGGCGCTTGTGGACTGGTACCGCAGCCGATCGCCCACGAGCTGGCCTTTTCCAAGAAAGCAAACATCAAGG                                                                                                                                                              >  3:217906/1‑149
                      CTGGGAACTGATCTGAGGAACTCCATGAAAAAGCACGCGCTCGCGCTGGCTGTGATCGGCGCTTGTGGTCTGGTACCGCAGGCGTTCGCCCACGAGCTGGCCTTTTCCAAGAAAGACAACATCAAGGTCGA‑‑‑‑CCTGGGGCTTGCACCAGC                                                                                                                                    >  6:202520/1‑149
                                             CATGAAAAAGCACGCGCTCGCGCTGGCTGTGATCGGCGCTTGTGGTCTGGTACCGCAGGCGTTCGCCCACGAGCTGGCCTTTTCCAAGAAAGACAACATCAAGGTCGA‑‑‑‑CCTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTC                                                                                                              >  8:165874/1‑148
                                                   AAAGCACGCGCTCGCGCTGGCTGTGATCGGCGCTTGTGGTCTGGTACCGCAGGCGTTCGCCCACGAGCTGGCCTTTTCCAAGAAAGACAACATCAAGGTCGA‑‑‑‑CCTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTG                                                                                                       <  7:165874/149‑1
                                                    AAGCACGCGCTCGCGCTGGCTGTGATCGGCGCTTGTGGTCTGGTACCGCAGGCGTTCGCCCACGAGCTGGCCTTTTCCAAGAAAGACAACATCAAGGTCGA‑‑‑‑CCTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTGA                                                                                                      <  5:202520/149‑1
                                                          GCGCTCGCGCTGGCTGTGATCGGCGCTTGTGGTCTGGTACCGCAGGCGTTCGCCCACGAGCTGGCCTTTTCCAAGAAAGACAACATCAAGGTCGAAGTGCCTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTGATG                                                                                                    >  7:127381/1‑149
                                                              TCGCGCTGGCTGTGATCGGCGCTTGTGGTCTGGTACCGCAGGCGTTCGCCCACGAGCTGGCCTTTTCCAAGAAAGACAACATCAAGGTCGA‑‑‑‑CCTGGGGCTTGCACCAGCTGGTGGCATCCCCGTGCACTTCGACCTTGATGTTGTC                                                                                               <  2:232369/146‑1
                                                              TCGCGCTGGCTGTGATCGGCGCTTGTGGTCTGGTACCGCAGGCGTTCGCCCACGAGCTGGCCTTTTCCAAGAAAGACAACATCAAGGTCGA‑‑‑‑CCTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTGATGTTGTC                                                                                               >  1:232369/1‑146
                                                                GCGCTGGCTGTGATCGGCGCTTGTGGTCTGGTACCGCAGGCGTTCGCCCACGAGCTGGCCTTTTCCAAGAAAGACAACATCAAGGTCGAAGTGCCTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTGATGTTGT                                                                                                <  8:127381/147‑1
                                                                                                                                                  AGGTCGA‑‑‑‑CCTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTGATGTTGTCTTTCTTGGAAAAGGCCAGCTCGTGGGCGAACGCCTGCGGTACCAGACCACAAGCGCCGATCACAGCCAGCGCGAGCGCGTGCTTTTT        <  2:49755/149‑1
                                                                                                                                                  AGGTCGA‑‑‑‑CCTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTGATGTTGTCTTTCTTGGAAAAGGCCAGCTCGTGGGCGAACGCCTGCGGTACCAGACCACAAGCGCCGATCACAGCCAGCGCGAGCGCGTGCTTTTT        <  7:147257/149‑1
                                                                                                                                                  AGGTCGA‑‑‑‑CCTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTGATGTTGTCTTTCTTGGAAAAGGCCAGCTCGTGGGCGAACGCCTGCGGTACCAGACCACAAGCGCCGATCACAGCCAGCGCGAGCGCGTGCTTTT         <  7:308281/148‑1
                                                                                                                                                    GTCGA‑‑‑‑CCTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTGATGTTGTCTTTCTTGGAAAAGGCCAGCTCGTGGGCGAACGCCTGCGGTACCAGACCACAAGCGCCGATCACAGCCAGCGCGAGCGCGTGCTTTTTCA      <  8:69800/149‑1
                                                                                                                                                    GTCGA‑‑‑‑CCTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTGATGTTGTCTTTCTTGGAAAAGGCCAGCTCGTGGGCGAACGCCTGCGGTACCAGACCACAAGCGCC                                      <  5:259887/117‑1
                                                                                                                                                    GTCGA‑‑‑‑ACTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTGATGTTGTCTTTCTTGGAAAAGGCCAGCTCGTGGGCGAACGCCTGCGGTACCAGACCACAAGCGCC                                      >  6:259887/1‑117
                                                                                                                                                     TCGA‑‑‑‑CCTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTGATGTTGTCTTTCTTGGAAAAGGCCAGCTCGTGGGCGAACGCCTGCGGTACCAGACCACAAGCGCCGATCACAGCCAGCGCGAGCGCGTGCTTTTTCAT     <  4:81934/149‑1
                                                                                                                                                     TCGA‑‑‑‑CCTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTGATGTTGTCTTTCTTGGAAAAGGCCAGCTCGTGGGCGAACGCCTGCGGTACCAGACCACAAGCGCCGATCACAGCCAGCGCGAGCGCGTGCTTTTTCAT     <  3:384459/149‑1
                                                                                                                                                     TCGA‑‑‑‑CCTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTGATGTTGTCTTTCTTGGAAAAGGCCAGCTCGTGGGCGAACGCCTGCGGTACCAGACCACAAGCGCCGATCACAGCCAGCGCGAGCGCGTGCTTTTTCAT     <  3:105151/149‑1
                                                                                                                                                       GA‑‑‑‑CCAGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTGATGTTGTCTTTCTTGGAAAAGGCCAGCTCGTGGGCGAACGCCTGCGGTACCAGACCACAAGCGCCGATCACAGCCAGCGCGAGCGCGTGCTTTTTCATG    >  6:19337/1‑148
                                                                                                                                                       GA‑‑‑‑CCAGGGGATAGCACCAGCAGGTGGCATACCCGGGCACTTCGACCTTGATGTTGTCTTTCTAGGAAAAGGCCAGCTCGTGGGCGAACGCCTGCGGTACCATACCACAAGCGCCCATCACAGCCAGCTCGAGCTCCTGCTTTTTCATG    >  4:217906/1‑148
                                                                                                                                                        A‑‑‑‑CCTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTGATGTTGTCTTTCTTGGAAAAGGCCAGCTCGTGGGCGAACGCCTGCGGTACCAGACCACAAGCGCCGATCACAGCCAGCGCGAGCGCGTGCTTTTTCATGGA  <  7:8446/149‑1
                                                                                                                                                                                                                                                                                                                 
TCTGCAAACAAGCCAACGGCACCTGGGAACTGATCTGAGGAACTCCATGAAAAAGCACGCGCTCGCGCTGGCTGTGATCGGCGCTTGTGGTCTGGTACCGCAGGCGTTCGCCCACGAGCTGGCCTTTTCCAAGAAAGACAACATCAAGGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1421374‑1421526
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggtcga‑‑‑‑CCTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTGATGTTGTCTTTCTTGGAAAAGGCCAGCTCGTGGGCGAACGCCTGCGGTACCAGACCACAAGCGCCGATCACAGCCAGCGCGAGCGCGTGCTTTTTCATGGA  <  NC_002947/1421564‑1421417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.