| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1427107 | NA (NA) | 12 (0.190) | 6/252 | NT | NA | coding (1005/1422 nt) | PP_1250 | group II intron‑encoding maturase |
| ? | NC_002947 | = 1427157 | NA (NA) | coding (1055/1422 nt) | PP_1250 | group II intron‑encoding maturase | |||||
CCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1426954‑1427107‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcgcAGCAGC‑ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCT < NC_002947/1427157‑1427010 CCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGAC > 7:188389/1‑149CCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGAC > 6:80654/1‑149CCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGAC > 3:43149/1‑149 CGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTGGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACT < 6:282229/149‑1 CGGGCCGGCGAACGGGTGTTGGCCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACT < 1:228209/149‑1 TCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCAGCAGC‑ATTCTGAGCCGG > 8:88765/1‑149 TCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCAGCAGC‑ATTCTGAGCAGG > 8:161996/1‑149 CCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCAGCAGC‑ATTCTGAGCCGGTCGCGTAAGCGGTCTA > 4:54120/1‑149 AGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGC > 4:396242/1‑109 AGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGC < 3:396242/109‑1 AAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCAATGGGATGAGCTGCCACCAGCAGCCAAGACTGCGC‑GTGGCAAGGATGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGC < 8:145898/146‑1 GACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCAGCAGC‑ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCG < 2:322428/147‑1 GACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCAGCAGC‑ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCG > 1:322428/1‑147 ACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCAGCAGC‑ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCA < 4:188875/148‑1 TGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCAGCAGC‑ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTT < 3:54120/149‑1 TGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCAGCAGC‑ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTT < 1:300684/149‑1 AACAGGAAGAAAAGCCAAGTGGCAAGGGCGTTGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCAGCAGC‑ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTTG < 5:332448/148‑1 ACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCAGCAGC‑ATTCTGAGCCGTTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGC < 7:88765/149‑1 ACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCAGCAGC‑ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGG < 7:161996/148‑1 TGCGCAGCAGC‑ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGT > 1:372147/1‑148 CGCAGCAGC‑ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTATTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAG < 6:79306/149‑1 CGCAGCAGC‑ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCA < 1:215747/148‑1 CGCAGCAGC‑ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCA < 8:138811/148‑1 CGCAGCAGC‑ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCA < 1:155571/148‑1 CGCAGCAGC‑ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTC < 7:258842/147‑1 CGCAGCAGC‑ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCC < 1:321571/115‑1 CGCAGCAGC‑ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCC > 2:321571/1‑115 CAGCAGC‑ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATACTTGCCACGCGCACTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCT > 1:371567/1‑149 CCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1426954‑1427107‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcgcAGCAGC‑ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCT < NC_002947/1427157‑1427010 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |