| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1433243 | 55 (0.850) | 5 (0.080) | 5/250 | NT | 7.9% | coding (1141/1248 nt) | PP_1255 | cis‑4‑hydroxy‑D‑proline oxidase |
| ? | NC_002947 | = 1433258 | 65 (1.060) | coding (1126/1248 nt) | PP_1255 | cis‑4‑hydroxy‑D‑proline oxidase | |||||
ACCCTCTCTGTGGAAGTGGGCTTGCCCGCGAATGGGCCGGTAGGGGCTAAAACCGGTTCAGTCGGTATGCGCCCATCTCAGGCCCACCAGTCTGCTCAGCCAACCGCCCCACCCATTCCGCCGTCACCGCCGCCTGGGTCAACCCCAGGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1433090‑1433243‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgctgTTGGCGTTTGGGCATCAGCACCTGGGGTTGACCCAGGCGGCGGTGACGGCGGAATGGGTGGGGCGGTTGGCTGAGCAGACTGGTGGGCCTGAGATGGGCGCATACCGACTGAACCGGTTTTAGCCCCTACCGGCCCATTCGCGGGC < NC_002947/1433258‑1433113 ACCCTCTCTGTGGAAGTGGGCTTGCCCGCGAATGGGCCGGTAGGGGCTAAAACCGGTTCAGTCGGTATGCGCCCATCTCAGGCCCACCAGTCTGCTCAGCCAACCGCCCCACCCATTCCGCCGTCACCGCCGCCTGGGTCAACCCCAGG < 5:344399/149‑1 CCTCTCTGTGGTAGTGGGCTTGCCCGCGAATGGGCCGGTAGGGGCTAAAACCGGTTCAGTCGGTATGCGCCCATCTCAGGCCCACCAGTCTGCTCAGCCAACCGCCCCACCCATTCCGCCGTCACCGCCGCCTGGGTCAACCCCAGGTG < 4:54812/149‑1 CTCTGTTTGGTAGTGGGCATGCCCGCGTATGGGGCGGTAGGGGCTAAAACCGGTTCAGTCGGTATGCGCCCATCTCAGGCCCACCAGTCTGCTCAGCCAACCGCCCCACCCATTCCGCCGTCACCGCCGCCTGGGTCAACCCCAGGTGC < 3:242385/149‑1 GCGAATGGGCCGGTAGGGGCTAAAACCGGTTCAGTCGGTATGCGCCCATCTCAGGCCCACCAGTCTGCTCAGCCAACCACCCCACCCATTCCGCCGTCACCGCCGCCTGGGTCAACCCCAGGGGCTGTTGGCGTTTGGGCATCAGCACC < 6:127268/149‑1 GCTAAAACCGGTTCAGTCGGTATGCGCCCATCTCAGGCCCACCAGTCTGCTCAGCCAACCGCCCCACCCATTCCGCCGTCACCGCCGCCTGGGTCAACCCCAG > 1:246113/1‑103 GCTAAAACCGGTTCAGTCGGTATGCGCCCATCTCAGGCCCACCAGTCTGCTCAGCCAACCGCCCCACCCATTCCGCCGTCACCGCCGCCTGGGTCAACCCCAG < 2:246113/103‑1 CCACCAGTCTGCTCAGCCAACCGCCCCACCCATTCCGCCGTCACCGCCGCCTGGGTCAACCCCAGGTGCTGTTGGCGTTTGGGCATCAGCACCTGGG < 5:391185/97‑1 CCACCAGTCTGCTCAGCCAACCGCCCCACCCATTCCGCCGTCACCGCCGCCTGGGTCAACCCCAGGTGCTGTTGGCGTTTGGGCATCAGCACCTGGG > 6:391185/1‑97 TCAGCCAACCGCCCCACCCATTCCGCCGTCACCGCCGCCTGGGTCAACCCCAGGTGCTGTTGGCGTTTGGGCATCAGCACCTG > 5:14334/1‑83 TCAGCCAACCGCCCCACCCATTCCGCCGTCACCGCCGCCTGGGTCAACCCCAGGTGCTGTTGGCGTTTGGGCATCAGCACCTG < 6:14334/83‑1 GGTGCTGTTGGCGTTTGGGCATCAGCACCTGGGGTTGACCCAGGCGGCGGTGACGGCGGAATGGGTGGGGCGGTTGGCTGAGCAGACTGGTGGGCCTGAGATGGGCGCATACCGACTGAACCGGTTTTAGCCCCTACCGGCCCATTCGC < 3:291449/149‑1 TGTTGGCGTTTGGGCATCAGCACCTGGGGTTGACCCAGGCGGCGGTGACGGCGGAATGGGTGGGGCGGTTGGCTGAGCAGACTGGTGGGCCTGAGATGGGCGCATACCGACTGCACCGGTTTTAGCCCCTACCGGCCCATTCGCGGGC > 7:268582/1‑148 TGTTGGCGTTTGGGCATCAGCACCTGGGGTTGACCCAGGCGGCGGTGACGGCGGAATGGGTGGGGCGGTTGGCTGAGCAGACTGGTGG < 7:114530/88‑1 TGTTGGCGTTTGGGCATCAGCACCTGGGGTTGACCCAGGCGGCGGTGACGGCGGAATGGGTGGGGCGGTTGGCTGAGCAGACTGGTGG > 8:114530/1‑88 ACCCTCTCTGTGGAAGTGGGCTTGCCCGCGAATGGGCCGGTAGGGGCTAAAACCGGTTCAGTCGGTATGCGCCCATCTCAGGCCCACCAGTCTGCTCAGCCAACCGCCCCACCCATTCCGCCGTCACCGCCGCCTGGGTCAACCCCAGGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1433090‑1433243‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgctgTTGGCGTTTGGGCATCAGCACCTGGGGTTGACCCAGGCGGCGGTGACGGCGGAATGGGTGGGGCGGTTGGCTGAGCAGACTGGTGGGCCTGAGATGGGCGCATACCGACTGAACCGGTTTTAGCCCCTACCGGCCCATTCGCGGGC < NC_002947/1433258‑1433113 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |