New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1607679 =	58 (0.890)	4 (0.060)	4/250	NT	7.0%	intergenic (‑146/+198)	PP_1408/rsuA	(R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase/16S rRNA pseudouridine(516) synthase
	?	NC_002947	1607722 =	51 (0.830)					intergenic (‑189/+155)	PP_1408/rsuA	(R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase/16S rRNA pseudouridine(516) synthase

AAAAGTCACATTACTTACCGAACGGCACTTGCGCGATCCCCAACCCACTGCTTGAATCCAAATCGTCAGTCTGCATGTGACTACCAAGTCACACCTGCAGCCGATGACACTTTTTGCCGGCCACCCAAAGCCTAGATGCCTTGGGGCACGGCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1607833‑1607679 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaaaAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCTGAGCGGTCGTATGACGACACGGGCTGTCT  >  NC_002947/1607722‑1607868                                                                                                                                                                                                                                                                                                                AAAAGTCACATTACTTACCGAACGGCACTTGCGCGATCCCCAACCCACTGCTTGAATCCAAATCGTCAGTCTGCATGTGACTACCAAGTCACACCTGCAGCCGATGACACTTTTTGCCGGCCACCCAAAGCCTAGATGCCTTGGGGCAC                                                                                                                                                           >  3:341215/1‑149   AAGTCACATTACTTACCGAACGGCACTTGCGCGATCCCCAACCCACTGCTTGAATCCAAATCGTCAGTCTGCATGTGACTACCAAGTCACACCTGCAGCCGATGACACTTTTTGCCGGCCACCCAAAGCCTAGATGCCTTGGGGCACGG                                                                                                                                                         <  2:18013/149‑1               TTACCGAACGGCACTTGCGCGATCCCCAACCCACTGCTTGAATCCAAATCGTCAGTCTGCATGTGACTACCAAGTCACACCTGCAGCCGATGACACTTTTTGCCGGCCACCCAAAGCCTAGATGCCTTGGGGCACGG                                                                                                                                                         >  1:93592/1‑137               TTACCGAACGGCACTTGCGCGATCCCCAACCCACTGCTTGAATCCAAATCGTCAGTCTGCATGTGACTACCAAGTCACACCTGCAGCCGATGACACTTTTTGCCGGCCACCCAAAGCCTAGATGCCTTGGGGCACGG                                                                                                                                                         <  2:93592/137‑1                                                                                  TACCAAGTCACACCTGCAGCCGATGACACTTTTTGCCGGCCACCCAAAGCCTAGATGCCTTGGGGCACG                                                                                                                                                          <  7:239748/69‑1                                                                                  TACCAAGTCACACCTGCAGCCGATGACACTTTTTGCCGGCCACCCAAAGCCTAGATGCCTTGGGGCACG                                                                                                                                                          >  8:239748/1‑69                                                                                                           ACACTTTTTGCCGGCCACCCAAAGCCTAGATGCCTTGGGGCACGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAG                                                  >  7:99269/1‑148                                                                                                               TTTTTGCCGGCCACCCAAAGCCTAGATGCCTTGGGGCACGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTT                                                         <  3:194724/137‑1                                                                                                               TTTTTGCCGGCCACCCAAAGCCTAGATGCCTTGGGGCACGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTT                                                         >  4:194724/1‑137                                                                                                                             CCAAAGCCTAGATGCCTTGGGGCACGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCT                               <  8:99269/149‑1                                                                                                                                                       GCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTATCGCTGAGCGGTCGTATGACGACACGGGCTG     >  1:244743/1‑149                                                                                                                                                         AAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCTGAGCGGTCGTATGACGACACGGGCTGTC   >  6:254963/1‑149                                                                                                                                                          AAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCTGAGCGGTCGTATGACGACACGGGCTGTCT  <  5:254963/149‑1                                                                                                                                                                                                                                                                                                                AAAAGTCACATTACTTACCGAACGGCACTTGCGCGATCCCCAACCCACTGCTTGAATCCAAATCGTCAGTCTGCATGTGACTACCAAGTCACACCTGCAGCCGATGACACTTTTTGCCGGCCACCCAAAGCCTAGATGCCTTGGGGCACGGCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1607833‑1607679 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaaaAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCTGAGCGGTCGTATGACGACACGGGCTGTCT  >  NC_002947/1607722‑1607868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.