New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 164173760 (0.920)4 (0.060) 3/252 NT 6.7% intergenic (‑47/+43) cmoA/PP_1442 tRNA 5‑methoxyuridine(34)/uridine‑5‑oxyacetic acid(34) metyltransferase CmoA/hypothetical protein
?NC_002947 = 1641757 54 (0.870)intergenic (‑67/+23) cmoA/PP_1442 tRNA 5‑methoxyuridine(34)/uridine‑5‑oxyacetic acid(34) metyltransferase CmoA/hypothetical protein

GAGCGCTTGATCATGTCCGGGAACACACGCACGACGTCTTCGTTGAAGACGAAGTCGGGCACCTGCTCCAGTGGTTGGGAGAAAAGGCGGTCGGGTTGTTTGCTCACGGCGAATCCAGGCGGCTGGTGATAGGCAGGGGGCGCATTCTAGCCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1641584‑1641737
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccaaCCATGCATCCCGGCTGCGGTTTGGCTAGAATGCGCCCCCTGCCTATCACCAGCCGCCTGGATTCGCCGTGAGCAAACAACCCGACCGCCTTTTCTCCCAACCACTGGAGCAGGTGCCCGACTTCGTCTTCAACGAAGACGTCG  <  NC_002947/1641757‑1641615
                                                                                                                                                                                                                                                                                                         
GAGCGCTTGATCATGTCCGGGAACACACGCACGACGTCTTCGTTGAAGACGAAGTCGGGCACCTGCTCCAGTGGTTGGGAGAAAAGGCGGTCGGGTTGTTTGCTCACGGCGAATCCAGGCGGCTGGTGATAGGCAGGGGGCGCATTCTA                                                                                                                                                      <  3:145682/149‑1
 AGCGCTTGATCATGTCCGGGAACACACGCACGACGTCTTCGTTGAAGACGAAGTCGGGCACCTGCTCCAGTGGTTGGGAGAAAAGGCGGTCGGGTTGTTTGCTCACGGCGAATCCAGGCGGCTGGTGATAGGCAGGGGGCGCATTCTAG                                                                                                                                                     <  3:367734/149‑1
                                   GTCTTCGTTGAAGACGAAGTCGGGCACCTGCTCCAGTGGTTGGGAGAAAAGGCGGTCGGGTTGTTTGCTCACGGCGAATCCAGGCGGCTGGTGATAGGCAGGGGGCGCATTCTAGCCAACCATGCATCCCGGCTGCGGTTTGGCTAGAA                                                                                                                   <  5:97392/149‑1
                                    TCTTCGTTGAAGACGAAGTCGGGCACCTGCTCCAGTGGTTGGGAGAAAAGGCGGTCGGGTTGTTTGCTCACGGCGAATCCAGGCGGCTGGTGATAGGCAGGGGGCGCATTCTAGCCAACCATGCATCCCGGCTGCGGTTTGGCTAGAAT                                                                                                                  <  2:11450/149‑1
                                              AGACGAAGTCGGGCACCTGCTCCAGTGGTTGGGAGAAAAGGCGGTCGGGTTGTTTGCTCACGGCGAATCCAGGCGGCTGGTGATAGGCAGGGGGCGCATTCTAGCCAACCATGCATCCCGGCTGCGGTTTGGCTAGAA                                                                                                                   >  5:348611/1‑138
                                              AGACGAAGTCGGGCACCTGCTCCAGTGGTTGGGAGAAAAGGCGGTCGGGTTGTTTGCTCACGGCGAATCCAGGCGGCTGGTGATAGGCAGGGGGCGCATTCTAGCCAACCATGCATCCCGGCTGCGGTTTGGCTAGAA                                                                                                                   <  6:348611/138‑1
                                                                GCTCCAGTGGTTGGGAGAAAAGGCGGTCGGGTTGTTTGCTCACGGCGAATCCAGGCGGCTGGTGATAGGCAGGGGGCGCATTCTA                                                                                                                                                      >  8:245280/1‑85
                                                                                                                                                    AGCCAACCATGCATCCCGGCTGCGGTTTGGCTAGAATGCGCCCCCTGCCTATCACCAGCCGCCTGGATTCGCCGTGAGCAAACAACCCGACCGCCTTTTCTCCCAACCACTGGAGCAGGTGCCCGACTTCGTCTTCAACGAAGACGTCG  <  7:276426/149‑1
                                                                                                                                                    AGCCAACCATGCATCCCGGCTGCGGTTTGGCTAGAATGCGCCCCCTGCCTATCACCAGCCGCCTGGATTCGCCGTGAGCAAACAACCCGACCGCCTTTTCTCCCAACCACTGGAGCAGGTGCCCG                          >  3:172354/1‑125
                                                                                                                                                    AGCCAACCATGCATCCCGGCTGCGGTTTGGCTAGAATGCGCCCCCTGCCTATCACCAGCCGCCTGGATTCGCCGTGAGCAAACAACCCGACCGCCTTTTCTCCCAACCACTGGAGCAGGTGCCCG                          <  4:172354/125‑1
                                                                                                                                                    AGCCAACCATGCATCCCGGCTGCGGTTTGGCTAGAATGCGCCCCCTGCCTATCACCAGCCGCCTGGATTCGCCGTGAGCAAACAACCCGACCGCCTTTTCTCCCAACCACTGGAGCAGGTGCCCG                          >  7:348750/1‑125
                                                                                                                                                    AGCCAACCATGCATCCCGGCTGCGGTTTGGCTAGAATGCGCCCCCTGCCTATCACCAGCCGCCTGGATTCGCCGTGAGCAAACAACCCGACCGCCTTTTCTCCCAACCACTGGAGCAGGTGCCCG                          <  8:348750/125‑1
                                                                                                                                                     GCCAACCATGCATCCCGGCTGCGGTTTGGCTAGAATGCGCCCCCTGCCTATCACCAGCCGCCTGGATTCGCCGTGAGCAAACAACCCGACCGCCTTTTCTCCCAACCACTGGAGCAGGTGCCCGACTTCGTCTTCAACGAA         <  1:95599/141‑1
                                                                                                                                                     GCCAACCATGCATCCCGGCTGCGGTTTGGCTAGAATGCGCCCCCTGCCTATCACCAGCCGCCTGGATTCGCCGTGAGCAAACAACCCGACCGCCTTTTCTCCCAACCACTGGAGCAGGTGCCCGACTTCGTCTTCAACGAA         >  2:95599/1‑141
                                                                                                                                                      CCAACCATGCATCCCGGCTGCGGTTTGGCTAGAATGCGCCCCCTGCCTATCACCAGCCGCCTGGATTCGCCGTGAGCAAACAACCCGACCGCCTTTTCTCCCAACCACTGGAGCAGGTGCCCGACTTCGTC                  >  7:134397/1‑131
                                                                                                                                                      CCAACCATGCATCCCGGCTGCGGTTTGGCTAGAATGCGCCCCCTGCCTATCACCAGCCGCCTGGATTCGCCGTGAGCAAACAACCCGACCGCCTTTTCTCCCAACCACTGGAGCAGGTGCCCGACTTCGTC                  <  8:134397/131‑1
                                                                                                                                                                                                                                                                                                         
GAGCGCTTGATCATGTCCGGGAACACACGCACGACGTCTTCGTTGAAGACGAAGTCGGGCACCTGCTCCAGTGGTTGGGAGAAAAGGCGGTCGGGTTGTTTGCTCACGGCGAATCCAGGCGGCTGGTGATAGGCAGGGGGCGCATTCTAGCCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1641584‑1641737
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccaaCCATGCATCCCGGCTGCGGTTTGGCTAGAATGCGCCCCCTGCCTATCACCAGCCGCCTGGATTCGCCGTGAGCAAACAACCCGACCGCCTTTTCTCCCAACCACTGGAGCAGGTGCCCGACTTCGTCTTCAACGAAGACGTCG  <  NC_002947/1641757‑1641615

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.