| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1731163 = | 22 (0.340) | 5 (0.100) | 5/208 | NT | 21.1% | intergenic (‑76/+115) | dapE/PP_1526 | succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase |
| ? | NC_002947 | 1731255 = | 20 (0.390) | intergenic (‑168/+23) | dapE/PP_1526 | succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase | |||||
GTTCCTGTCGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1731335‑1731163‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgggagcgggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATG > NC_002947/1731255‑1731401 GTTCCTGTCGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGG < 8:385900/149‑1GTTCCTGTCGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGG < 4:229184/149‑1 TTCCTGTCGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGG < 7:162123/149‑1 CTGTCGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGC > 5:306833/1‑149 CTGTCGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGGGGGAGC > 2:409235/1‑149 TCGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGG < 3:210530/148‑1 CGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGTGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGC < 1:409235/149‑1 TCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGT < 2:311355/149‑1 TCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGT < 6:306833/149‑1 CCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGG > 8:161696/1‑138 CCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGG < 7:161696/138‑1 GCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAG > 4:60305/1‑126 GCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAG < 3:60305/126‑1 ACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCA > 4:341756/1‑123 ACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCA < 3:341756/123‑1 CCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGA > 4:296439/1‑148 GTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCA < 2:287881/149‑1 GGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCC < 5:314019/124‑1 GGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCC > 6:314019/1‑124 AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAAC < 4:192888/149‑1 GGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATC < 5:191007/149‑1 GGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCACTGCCACATAAGGCAACGACTGCACCAGCAACATC < 7:272661/149‑1 GTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCA < 4:37750/149‑1 GCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACC > 7:199283/1‑149 CCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACC > 5:136960/1‑147 GCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAAGGACTGCACCAGCAACATCGCCACCCAGAAGCGCATG > 3:279319/1‑149 GTTCCTGTCGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1731335‑1731163‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgggagcgggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATG > NC_002947/1731255‑1731401 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |