New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1780555 =	77 (1.180)	6 (0.100)	4/252	NT	7.5%	coding (789/1197 nt)	dapC	N‑succinyl‑L,L‑diaminopimelate aminotransferase
	?	NC_002947	1780593 =	74 (1.190)					coding (751/1197 nt)	dapC	N‑succinyl‑L,L‑diaminopimelate aminotransferase

CTTCGACGAGGATGCGCCACCGCCAGGCCTGCTGTCGGCATGCGCCGAGCTTGGTCGTAGCGATTTTGCGCGCTGCGTGGTGTTCCACAGCCTGTCCAAGCGCTCCAACCTGCCTGGGCTGCGCTCGGGCTTCGTCGCGGGCGATGCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1780705‑1780555 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccagGCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCAC  >  NC_002947/1780593‑1780740                                                                                                                                                                                                                                                                                                             CTTCGACGAGGATGCGCCACCGCCAGGCCTGCTGTCGGCATGCGCCGAGCTTGGTCGTAGCGATTTTGCGCGCTGCGTGGTGTTCCACAGCCTGTCCAAGCGCTCCAACCTGCCTGGGCTGCGCTCGGGCTTCGTCGCGGGCGATGCCC                                                                                                                                                        <  5:180742/149‑1    CGACGAGGATGCGCCACCGCCAGGCCTGCTGTCGGCATGCGCCGAGCTTGGTCGTAGCGATTTTGCGCGCTGCGTGGTGTTCCACAGCCTGTCCAAGCGCTCCAACCTGCCTGGGCTGCGCTCGGGCTTCGTCGCGGGCGATGCCCA                                                                                                                                                       <  6:92968/147‑1     GACGAGGATGCGCCACCGCCAGGCCTGCTGTCGGCATGCGCCGAGCTTGGTCGTAGCGATTTTGCGCGCTGCGTGGTGTTCCACAGCCTGTCCAAGCGCTCCAACCTGCCTGGGCTGCGCTCGGGCTTCGTCGCGGGCGATGCC                                                                                                                                                         >  8:18502/1‑144                                                                                                               TGCCTGGGCTGCGCTCGGGCTTCGTCGCGGGCGATGCCCAGGCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGT                                          >  3:308429/1‑149                                                                                                               TGCCTGGGCTGCGCTCGGGCTTCGTCGCGGGCGATGCCCAGGCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGT                                          >  7:200618/1‑149                                                                                                                  CTGGGCTGCGCTCGGGCTTCGTCGCGGGCGATGCCCAGGCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCG                                        >  6:20881/1‑148                                                                                                                    GGGCTGCGCTCGGGCTTCGTCGCGGGCGATGCCCAGCCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAG                                     >  1:67120/1‑149                                                                                                                     GGCTGCGCTCGGGCTTCGTCGCGGGCGATGCCCAGGCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAA                                      <  4:308429/147‑1                                                                                                                     GGCTGCGCTCGGGCTTCGTCGCGGGCGATGCCCAGGCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAA                                      <  8:200618/147‑1                                                                                                                                                    CCAGGCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGAT     <  2:232154/149‑1                                                                                                                                                       GGCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCTACAGCAGGCCTGGCGGTGGCGCATCCTCGGCGAAGTCCACCTCGCTGTAGCACTCGTCGGCGGCGATCA   <  1:238093/148‑1                                                                                                                                                       GGCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCAC  >  3:132800/1‑149                                                                                                                                                       GGCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCA   >  2:238093/1‑148                                                                                                                                                                                                                                                                                                             CTTCGACGAGGATGCGCCACCGCCAGGCCTGCTGTCGGCATGCGCCGAGCTTGGTCGTAGCGATTTTGCGCGCTGCGTGGTGTTCCACAGCCTGTCCAAGCGCTCCAACCTGCCTGGGCTGCGCTCGGGCTTCGTCGCGGGCGATGCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1780705‑1780555 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccagGCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAAGCTCGGCGCATGCCGACAGCAGGCCTGGCGGTGGCGCATCCTCGTCGAAGTACAGCTCGCTGTAGCACTCGTCGGCGGCGATCAC  >  NC_002947/1780593‑1780740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.