| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1824128 = | 74 (1.140) | 5 (0.080) | 4/252 | NT | 6.8% | coding (1126/2574 nt) | mutS | DNA mismatch repair protein MutS |
| ? | NC_002947 | 1824165 = | 67 (1.080) | coding (1089/2574 nt) | mutS | DNA mismatch repair protein MutS | |||||
TCCGCTGCCTGCTCGACAGCTACCGCTTCGAGAAGCTGCAGCCGCAGTTGAAGGAAATTGGCGATATCGAGCGGATCCTCGCCCGGATTGGCCTGCGCAATGCCCGCCCGCGCGACCTGGCACGCCTGCGCGATGCGCTGGGCGCGTTGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1824280‑1824128‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccagGTCGCGCGGGCGGGCATTGCGCAGGCCAATCCGGGCGAGGATCCGCTCGATATCGCCAATTTCCTTCAACTGCGGCTGCAGCTTCTCGAAGCGGTAGCTGTCGAGCAGGCAGCGGATCGAGTCCTGGCGTGCTTGCAGCACCTTGAGG > NC_002947/1824165‑1824312 TCCGCTGCCTGCTCGACAGCTACCGCTTCGAGAAGCTGCAGCCGCAGTTGAAGGAAATTGGCGATATCGAGCGGATCCTCGCCCGGATTGGCCTGCGCAATGCCCGCCCGCGCGACCTGGCACGCCTGCGCGATGCGCTGGGCGCGTTG < 1:22549/149‑1TCCGCTGCCTGCTCGACAGCTACCGCTTCGAGAAGCTGCAGCCGCAGTTGAAGGAAATTGGCGATATCGAGCGGATCCTCGCCCGGATTGGCCTGCGCAATGCCCGCCCGCGCGACCTGGCACGCCTGCGCGATGCGCTGGGCGCGTTG < 8:11304/149‑1 CGCTGCCTGCTCGACAGCTACCGCTTCGAGAAGCTGCAGCCGCAGTTGAAGGAAATTGGCGATATCGAGCGGATCCTCGCCCGGATTGGCCTGCGCAATGCCCGCCCGCGCGACCTGGCACGCCTGCGCGATGCGCTGGGCGCGTTGC > 3:344905/1‑148 gtTGCCTGCTCGACAGCTACCGCTTCGAGAAGCTGCAGCCGCAGTTGAAGGAAATTGGCGATATCGAGCGGATCCTCGCCCGGATTGGCCTGCGCAATGCCCGCCCGCGCGACCTGGCACGCCTGCGCGATGCGCTGGGCGCGTTGCCA < 5:326489/147‑1 GCTGCCTGCTCGACAGCTACCGCTTCGAGAAGCTGCAGCCGCAGTTGAAGGAAATTGGCGATATCGAGCGGATCCTCGCCCGGATTGGCCTGCGCAATGCCCGCCCGCGCGACCTGGCACGCCTGCGCGATGCGCTGGGCGCGTTGC > 7:27668/1‑147 GCCTGCTCGACAGCTACCGCTTCGAGAAGCTGCAGCCGCAGTTGAAGGAAATTGGCGATATCGAGCGGATCCTCGCCCGGATTGGCCTGCGCAATGCCCGCCCGCGCGACCTGGCACGCCTGCGCGATGCGCTGGGCGCGTTGCCA > 5:332362/1‑146 TTGGCGATATCGAGCGGATCCTCGCCCGGATTGGCCTGCGCAATGCCCGCCCGCGCGACCTGGCACGCCTGCGCGATGCGCTGGGCGCGTTGC > 7:210839/1‑93 TTGGCGATATCGAGCGGATCCTCGCCCGGATTGGCCTGCGCAATGCCCGCCCGCGCGACCTGGCACGCCTGCGCGATGCGCTGGGCGCGTTGC < 8:210839/93‑1 GACCTGGCACGCCTGCGCGATGCGCTGGGCGCGTTGCCAGGTCGCGCGGGCGGGCATTGCGCAGGCCAATCCGGGCGAGGATCCGCTCGATATCGCCAATTTCCTTCAACTGCGGCTGCAGCTTCTCGAAGCGGTAGCTGTCGAGCAGG > 4:279237/1‑149 GACCTGGCACGCCTGCGCGATGCGCTG‑‑‑GCG‑TGCCAGGTCGCGCGGGCGGGCATTGCGCAGGCCAATCCGGGCGAGGATCCGCTCGATATCGCCAATTTCCTTCAACTGCGGCTGCAGCTTCTCGAAGCGGTAGCTGTCGAGCAGGCAGC > 6:125766/1‑149 ACCTGGCACGCCTGCGCGATGCGCTGGGCGCGTTGCCAGGTCGCGCGGGCGGGCATTGCGCAGGCCAATCCGGGCGAGGATCCGCTCGATATCGCCAATTTCCTTCAACTGCGGCTGCAGCTTCTCGAAGCGGTAGCTGTCGAGCAGG < 5:56198/148‑1 ACCTGGCACGCCTGCGCGATGCGCTGGGCGCGTTGCCAGGTCGCGCGGGCGGGCATTGCGCAGGCCAATCCGGGCGAGGATCCGCTCGATATCGCCAATTTCCTTCAACTGCGGCTGCAGCTTCTCGAAGCGGTAGCTGTCGAGCAGG > 6:56198/1‑148 GGCGCGTTGCCAGGTCGCGCGGGCGGGCATTGCGCAGGCCAATCCGGGCGAGGATCCGCTCGATATCGCCAATTTCCTTCAACTGCGGCTGCAGCTTCTCGAAGCGGTAGCTGTCGAGCAGGCAGCGGATCGAGTCCTGGCGTGCTTGC < 3:279237/149‑1 CCAGGTCGCGCGGGCGGGCATTGCGCAGGCCAATCCGGGCGAGGATCCGCTCGATATCGCCAATTTCCTTCAACTGCGGCTGCAGCTTCTCGAAGCGGTAGCTGTCGAGCAGGCAGCGGATCGAGTCCTGGCGTGCTTGCAGCACCTTG < 7:350436/149‑1 CCAGGTCGCGCGGGCGGGCATTGCGCAGGCCAATCCGGGCGAGGATCCGCTCGATATCGCCAATTTCCTTCAACTGCGGCTGCAGCTTCTCGAAGCGGTAGCTGTCGAGCAGGCAGCGGATCGAGTCCTGGCGTGCTTGCAGCACCTT > 8:350436/1‑148 GGTCGCGCGGGCTGGCATTGCGCAGGCCAATCCGGGCGAGTATCCGCTCGATATCGCCAATTTCCTTCAACTGCGGCTGCATCTTCTCGAAGCGGTAGCTGTCGAGCAGGCAGCGGATCGAGTCCTGGCGTGCTTGCAGCACCTTGAGG < 3:7945/149‑1 TCCGCTGCCTGCTCGACAGCTACCGCTTCGAGAAGCTGCAGCCGCAGTTGAAGGAAATTGGCGATATCGAGCGGATCCTCGCCCGGATTGGCCTGCGCAATGCCCGCCCGCGCGACCTGGCACGCCTGCGCGATGCGCTGGGCGCGTTGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1824280‑1824128‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccagGTCGCGCGGGCGGGCATTGCGCAGGCCAATCCGGGCGAGGATCCGCTCGATATCGCCAATTTCCTTCAACTGCGGCTGCAGCTTCTCGAAGCGGTAGCTGTCGAGCAGGCAGCGGATCGAGTCCTGGCGTGCTTGCAGCACCTTGAGG > NC_002947/1824165‑1824312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |