| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2260519 = | 47 (0.720) | 3 (0.050) | 3/246 | NT | 5.7% | coding (1107/2736 nt) | fimV | motility protein FimV |
| ? | NC_002947 | 2260618 = | 56 (0.920) | coding (1206/2736 nt) | fimV | motility protein FimV | |||||
TCTCGGCTTCTTGCTGGGCCTTGCGTTTGCGCGCCAGCAGCCACAGCAGCAGTGCCAGCACCAGGATGCTGGAACCGGCAATCACGCCCAGAAGCCACGGGTTGCCCAGGACCGAGTCGAGCGCCCCCTTCGGCTGGCTGGCGGGTGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2260670‑2260519‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgctggcACTGCTGCTGTGGCTGCTGGCGCGCAAACGCAAGGCCCAGCAAGAAGCCGAGAAGCACCTGCGCATGGCGCGGGCGCTGGAAGAAGAGCAGGGCGCAGGTTTCGACAGCGATATCGAGAGCTTCGGCGGCGTCGAAGCCCCCGAGCC > NC_002947/2260618‑2260764 TCTCGGCTTCTTGCTGGGCCTTGCGTTTGCGCGCCAGCAGCCACAGCAGCAGTGCCAGCACCAGGATGCTGGAACCGGCAATCACGCCCAGAAGCCACGGGTTGCCCAGGACCGAGTCGAGCGCCCCCTTCGGCTGGCTGGCGGGTGCT > 8:105074/1‑149 TCGGCTTCTTGCTGGGCCTTGCGTTTGCGCGCCAGCAGCCACAGCAGCAGTGCCAGCACCAGGATGCTGGAACCGGCAATCACGCCCAGAAGCCACGGGTTGCCCAGGACCGAGTCGAGCGCCCCCTTCGGCTGGCTGGCGGGTGCTGG > 7:208137/1‑149 CAGCAGTGCCAGCACCAGGATGCTGGAACCGGCAATCACGCCCAGAAGCCACGGGTTGCCCAGGACCGAGTCGAGCGCCCCCTTCGGCTGGCTGGCGGGTGCTGGCACTGCTGCTGTGGCTGCTGGCGCGCAAACGCAAGGCCCAGC > 3:133336/1‑147 CCAGCACCAGGATGCTGGAACCGGCAATCACGCCCAGAAGCCACGGGTTGCCCAGGACCGAGTCGAGCGCCCCCTTCGGCTGGCTGGCGGGTGCTGGCACTGCTGCTGTGGCTGCTGGCGCGCAAACGCAAGGCCCAGCAAGAAGCC > 4:364061/1‑147 GGAACCGGCAATCACGCCCAGAAGCCACGGGTTGCCCAGGACCGAGTCGAGCGCCCCCTTCGGCTGGCTGGCGGGTGCT > 2:250290/1‑79 CGAGTCGAGCGCCCCCTTCGGCTGGCTGGCGGGTGCTGGCACTGCTGCTGTGGCTGCTGGCGCGCAAACGCAAGGCCCAGCAAGAAGCCGAGAAGCACCTGCGCATGGCGCGGGCGCTGGAAGAAGAGCAGGGCGCAGGTTTCGACAGC < 3:364061/149‑1 GCACTGCTGCTGTGGCTGCTGGCGCGCAAACGCAAGGCCCAGCAAGAAGCCGAGAAGCACCTGCGCATGGCGCGGGCGCTGGAAGAAGAGCAGGGCGCAGGTTTCGACAGCGATATCGAGAGCTTCGGCGGCGTCGAAGCCCCCGAGCC > 1:317495/1‑149 TCTCGGCTTCTTGCTGGGCCTTGCGTTTGCGCGCCAGCAGCCACAGCAGCAGTGCCAGCACCAGGATGCTGGAACCGGCAATCACGCCCAGAAGCCACGGGTTGCCCAGGACCGAGTCGAGCGCCCCCTTCGGCTGGCTGGCGGGTGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2260670‑2260519‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgctggcACTGCTGCTGTGGCTGCTGGCGCGCAAACGCAAGGCCCAGCAAGAAGCCGAGAAGCACCTGCGCATGGCGCGGGCGCTGGAAGAAGAGCAGGGCGCAGGTTTCGACAGCGATATCGAGAGCTTCGGCGGCGTCGAAGCCCCCGAGCC > NC_002947/2260618‑2260764 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |