New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2363970 =	61 (0.940)	5 (0.080)	4/248	NT	8.5%	intergenic (‑94/+239)	PP_2076/lysA‑I	hypothetical protein/diaminopimelate decarboxylase
	?	NC_002947	2364009 =	50 (0.820)					intergenic (‑133/+200)	PP_2076/lysA‑I	hypothetical protein/diaminopimelate decarboxylase

TCAAGCTGGGTGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCCTGGCGCAACGAGAGGCAGGTGGGTTGACGTGAAAGGCGACGAAAAGCCTGCCAACGTCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2364124‑2363970 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgtcaacCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGC  >  NC_002947/2364009‑2364156                                                                                                                                                                                                                                                                                                                 TCAAGCTGGGTGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCCTGGCGCAACGAGAGGCAGGTGGGTTGACGTGAAAGGCGACGAAAAGCCTGCCAAC                                                                                                                                                            >  5:1919/1‑149   atGCTGTGTGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACCGTATTAAAAAAAGCTACCAGGGTGGCTCTGCACCCGATAGCCCTGGCGCAACGAGAGGCAGGTGGGTTGACGTGAAAGGCGACGAAAAGCCTGCCAAC                                                                                                                                                            <  3:135747/145‑1    AGCTGGCTGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACAGTATTAAAAAAAGCCACCAGCGTGGCTCTGAACCCGATAGCCCTGGCGCAACGAGAGGCAGGAGGGTTGACGAGAAAGGCGACGAACAGCCTGCCAACGT                                                                                                                                                          >  6:250462/1‑148     GCTGGGTGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCCTGGCGCAACGAGAGGCAGGTGGGTTGACGTGAAAGGCGACGAAAAGCCTGCCAACGTC                                                                                                                                                         >  3:231250/1‑148     GCTGGGTGAGATCGGGCCGCTTTGCGGCCATGTCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCATGGCGCAACGAGAGGCAGGTGGGTTGAAGTGAAAGGCGACGAAAAGCCTGCCAACGTC                                                                                                                                                         >  7:120325/1‑148      CTGGGTGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCCTGGCGCAACGAGAGGCAGGTGGGTTGACGTGAAAGGCGACGAAAAGCCTGCCAACGTCAA                                                                                                                                                       <  6:384313/149‑1                                                                                                                    GGTTGACGTGAAAGGCGACGAAAAGCCTGCCAACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCC                                         >  4:20002/1‑149                                                                                                                     GTTGACGTGAAAGGCGACGAAAAGCCTGCCAACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATC                                                                          <  8:103846/115‑1                                                                                                                      TTGACGTGAAAGGCGACGAAAAGCCTGCCAACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAG                                       >  1:73977/1‑149                                                                                                                      TTGACGTGAAAGGCGACGAAAAGCCTGCCAACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAG                                       >  7:192343/1‑149                                                                                                                           GTGAAAGGCGACGAAAAGCCTGCCAACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGA                                  <  3:20002/149‑1                                                                                                                                                     CGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGT        <  8:196102/149‑1                                                                                                                                                     CGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGC‑TTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTG       <  3:206043/149‑1                                                                                                                                                      GTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGT        >  4:56323/1‑148                                                                                                                                                         AACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAA     <  1:81123/148‑1                                                                                                                                                           CCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGC  <  8:47971/149‑1                                                                                                                                                                                                                                                                                                                 TCAAGCTGGGTGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCCTGGCGCAACGAGAGGCAGGTGGGTTGACGTGAAAGGCGACGAAAAGCCTGCCAACGTCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2364124‑2363970 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgtcaacCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGC  >  NC_002947/2364009‑2364156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.