| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2863930 = | 62 (0.950) | 5 (0.080) | 4/246 | NT | 8.1% | coding (990/1194 nt) | gllR | HTH‑type transcriptional regulator GalR |
| ? | NC_002947 | 2863974 = | 56 (0.920) | coding (1034/1194 nt) | gllR | HTH‑type transcriptional regulator GalR | |||||
CGCCGGTGACTGCAGGCAGCCACTGCGCTGCATGAGGCCGATGGCGCGGGCAGTGCCGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGCCGCTGGCAATCTCGTAAGCCAACTGGTGCGCAGACACCGCCGCCAGCATGTCCGAACGCACCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2864083‑2863930‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaccagtTGGCTTACGAGATTGCCAGCGGCGAACTGCAACGCCTGCCGCTGGCACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAGTCACCGGCGGCAGTCGCGCTGATGGCCTGTATCCGCCAGGT > NC_002947/2863974‑2864115 CGCCGGTGACTGCAGGCAGCCACTGCGCTGCATGAGGCCGAAGGCGCGGGCAGTGCCGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGCCGCTGGCAATCTCGTAAGCCAACTGGTGCGCAGACACCGCCGCCAGCATGTCCGAACGCA > 2:73882/1‑149 GCCGGTGACTGCAGGCAGCCACTGCGCTGCATGAGGCCGATGGCGCGGGCAGTGCCGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGCCGCTGGCAATCTCGTAAGCCAACTGGTGCGCAGACACCGCCGCCAGCATGTCCGAACGCAC < 3:269650/149‑1 GCCGGTGACTGCAGGCAGCCACTGCGCTGCATGAGGCCGATGGCGCGGGCAGTGCCGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGCCGCTGGCAATCTCGTAAGCCAACTGGTGCGCAGACACCGCCGCCAGCATGTCCGAACGCAC > 1:29229/1‑149 CCGGTGACTGCAGGCAGCCACTGCGCTGCATGAGGCCGATGGCGCGGGCAGTGCCGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGCCGCTGGCAATCTCGTAAGCCAACTGGTGCGCAGACACCGCCGCCAGCATGTCCGAACGCAC > 6:144229/1‑148 GCAGCCACTGCGCTGCATGAGGCCGATGGCGCGGGCAGTGCCGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGCCGCTGGCAATCTCGTAAGCCAACTGGTGCGCAGACACCGCCGCCAGCATGTCCGAAC < 1:49561/131‑1 GCAGCCACTGCGCTGCATGAGGCCGATGGCGCGGGCAGTGCCGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGCCGCTGGCAATCTCGTAAGCCAACTGGTGCGCAGACACCGCCGCCAGCATGTCCGAAC > 2:49561/1‑131 GCCAACTGGTGCGCAGACACCGCCGCCAGCATGTCCGAACGCACCAGTTGGCTTACGAGATTGCCAGCGGCGAACTGCAACGCCTGCCGCTGGCACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAG > 5:284042/1‑149 CAACTGGTGCGCAGACACCGCCGCCAGCATGTCCGAACGCACCAGTTGGCTTACGAGATTGCCAGCGGCGAACTGCAACGCCTGCCGCTGG < 1:296527/91‑1 CAACTGGTGCGCAGACACCGCCGCCAGCATGTCCGAACGCACCAGTTGGCTTACGAGATTGCCAGCGGCGAACTGCAACGCCTGCCGCTGG > 2:296527/1‑91 CAACCGGTGCGCAGACACCGCCGCCAGCATGTCCGAACGCACCAGTTGGCTTACGAGATTGCCAGCGGCGAACTGCAACGCCTGCCGCTGGCACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAGTC > 8:154684/1‑149 CCGCCGCCAGCATGTCCGAACGCACCAGTTGGCTTACGAGATTGCCAGCGGCGAACTGCAACGCCTGCCGCTGGCACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAGTCACCGGCGGCAGTCGCGC < 6:284042/149‑1 CGCACCAGTTGGCTTACGAGATTGCCAGCGGCGAACTGCAACGCCTGCCGCTGGCACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAGTCACCGGCGGCAGTCGCGCTGATGGCCTGTATCCGC < 6:215310/146‑1 GCACCAGTTGGCTTACGAGATTGCCAGCGGCGAACTGCAACGCCTGCCGCTGGCACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAGTCACCGGCGGCAGTCGCGCTGATGGCCTGTATCCGCCAGG > 8:312716/1‑149 ACCAGTTGGCTTACGAGATTGCCAGCGGCGAACTGCAACGCCTGCCGCTGGCACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAGTCACCGGCGGCAGTCGCGCTGATGGCCTGTATCCGCCAGGT > 7:348375/1‑148 GTTGGCTTACGAGATTGCCAGCGGCGAACTGCAACGCCTGCCGCTGGCACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGC < 7:6884/86‑1 GTTGGCTTACGAGATTGCCAGCGGCGAACTGCAACGCCTGCCGCTGGCACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGC > 8:6884/1‑86 TTGGCTTACGAGATTGCCAGCGGCGAACTGCAACGCCTGCCGCTGGCACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAGTCACCGGCGG < 7:68949/112‑1 TTGGCTTACGAGATTGCCAGCGGCGAACTGCAACGCCTGCCGCTGGCACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAGTCACCGGCGG > 8:68949/1‑112 CGCCGGTGACTGCAGGCAGCCACTGCGCTGCATGAGGCCGATGGCGCGGGCAGTGCCGGGCAGTGCCAGCGGCAGGCGTTGCAGTTCGCCGCTGGCAATCTCGTAAGCCAACTGGTGCGCAGACACCGCCGCCAGCATGTCCGAACGCACCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2864083‑2863930‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaccagtTGGCTTACGAGATTGCCAGCGGCGAACTGCAACGCCTGCCGCTGGCACTGCCCGGCACTGCCCGCGCCATCGGCCTCATGCAGCGCAGTGGCTGCCTGCAGTCACCGGCGGCAGTCGCGCTGATGGCCTGTATCCGCCAGGT > NC_002947/2863974‑2864115 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |