New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3436572	52 (0.800)	4 (0.060)	4/256	NT	6.8%	coding (507/813 nt)	gpI	tail formation protein
	?	NC_002947	= 3436604	59 (0.940)					coding (539/813 nt)	gpI	tail formation protein

ACCGGCCGGGTGAAGGCTCGATCATTTCTCCGCAGCTGGAGGAGCGCTTGCGCGCCCTGGTCGATGCGACGAAGAACGAGCGCAGCCACTACACCTTCCGGCTCGGTGCCCGGTTCGACGACGGCCTGGTGGCTACCGGAGCCAGTCAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3436421‑3436572 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcGCAG‑‑GCTCCACCGTCTTGCGGTGCAGCAGCTGGCCCTGACTGGCTCCGGTAGCCACCAGGCCGTCGTCGAACCGGGCACCGAGCCGGAAGGTGTAGTGGCTGCGCTCGTTCTTCGTCGCATCGACCAGGGCGCGCAAGCGCTCCTC  <  NC_002947/3436604‑3436459                                                                                                                                                                                                                                                                                                              ACCGGCCGGGTGAAGGCTCGATCATTTCTCCGCAGCTGGAGGAGCGCTTGCGCGCCCTGGTCGATGCGACGAAGAACGAGCGCAGCCACTACACCTTCCGGCTCGGTGCCCGGTTCGACGACGGCCTGGTGGCTACCGGAGCCAGTCAG                                                                                                                                                         <  7:226527/149‑1    GGCCGGGTGAAGGCTCGATCATTTCTCCGCAGCTGGAGGAGCGCTTGCGCGCCCTGGTCGATGTGACGAAGAACGAGCGCAGCCACTACACCTTCCGGCTCGGTGCCCGGTTCGACGACGGCCTGGTGGCTACCGGAGCCAGTCAGGGC                                                                                                                                                      >  4:71708/1‑149     GCCGGGTGAAGGCTCGATCATTTCTCCGCAGCTGGAGGAGCGCTTGCGCGCCCTGGTCGATGCGACGAAGAACGAGCGCAGCCACTACACCTTCCGGCTCGGTGCCCGGTTCGACGACGGCCTGGTGGCTACCGGAGCCAGTCAGGGC                                                                                                                                                      >  2:1383/1‑148                                   GCTGGAGGAGCGCTTGCGCGCCCTGGTCGATGCGACGAAGAACGAGCGCAGCCACTACACCTTCCGGCTCGGTGCCCGGTTCGACGACGGCCTGGTGGCTACCGGAGCCAGTCAGGGC‑CAGCTGCTCCACCGTCTTGCGGTGCAGCAGC                                                                                                                      <  8:17723/149‑1                                       GAGGAGCGCTTGCGCGCCCTGGTCGATGCGACGAAGAACGAGCGCAGCCACTACACCTTCCGGCTCGGTGCCCGGTTCGACGACGGCCTGGTGGCTACCGGAGCCAGTCAGGGCGCAG‑‑GCTCCACCGTCTTGCGGTGCAGCAGCTGGC                                                                                                                  <  5:357416/148‑1                                                                         AGAACGAGCGCAGCCACTACACCTTCCGGCTCGGTGCCCGGTTCGACGACGGCCTGGTGGCTACCGGAGCCAGTCAGGGCGCAG‑‑GCTCCACCGTCTTGCGGTGCAGCAGCTGG                                                                                                                   >  7:341690/1‑113                                                                         AGAACGAGCGCAGCCACTACACCTTCCGGCTCGGTGCCCGGTTCGACGACGGCCTGGTGGCTACCGGAGCCAGTCAGGGCGCAG‑‑GCTCCACCGTCTTGCGGTGCAGCAGCTGG                                                                                                                   <  8:341690/113‑1                                                                                                                                                     GGGCGCAG‑‑GCTCCACCGTCTTGCGGTGCAGCAGCTGGCCCTGACTGGCTCCGGTAGCCACCAGGCCGTCGTCGAACCGGGCACCGAGCCGGAAGGTGTAGTGGCTGCGCTCGTTCTTCGTCGCATCGACCAGGGCGCGCAAGCGCTCCT   <  1:199429/149‑1                                                                                                                                                     GGGCGCAG‑‑GCTCCACCGTCTTGCGGTGCAGCAGCTGGCCCTGACTGGCTCCGGTAGCCACCAGGCCGTCGTCGAACCGGGCACCGAGCCGGAAGGTGTAGTGGCTGCGCTCGTTCTTCGTCGCATCGACCAGGGCGCGCAAGCGCTCCT   >  4:163531/1‑149                                                                                                                                                       GCGCAG‑‑GCTCCACCGTCTTGCGGTGCAGCAGCTGGCCCTGACTGGCTCCGGTAGCCACCAGGCCGTCGTCGAACCGGGCACCGAGCCGGAAGGTGTAGTGGCTGCGCTCGTTCTTCGTCGCATCGACCAGGGCGCGCAAGCGCTCCTC  >  3:334915/1‑148                                                                                                                                                                                                                                                                                                              ACCGGCCGGGTGAAGGCTCGATCATTTCTCCGCAGCTGGAGGAGCGCTTGCGCGCCCTGGTCGATGCGACGAAGAACGAGCGCAGCCACTACACCTTCCGGCTCGGTGCCCGGTTCGACGACGGCCTGGTGGCTACCGGAGCCAGTCAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3436421‑3436572 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcGCAG‑‑GCTCCACCGTCTTGCGGTGCAGCAGCTGGCCCTGACTGGCTCCGGTAGCCACCAGGCCGTCGTCGAACCGGGCACCGAGCCGGAAGGTGTAGTGGCTGCGCTCGTTCTTCGTCGCATCGACCAGGGCGCGCAAGCGCTCCTC  <  NC_002947/3436604‑3436459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.