New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3685928	51 (0.780)	3 (0.050)	3/256	NT	5.2%	coding (336/1332 nt)	PP_3251	hypothetical protein
	?	NC_002947	= 3685965	59 (0.940)					coding (373/1332 nt)	PP_3251	hypothetical protein

GCCTGGAGCAAGAAGCATACCGCCGAGGTCGCCAAGGCCTACACCGTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTG‑CAACAGGTTGCGCCTACCAAGGCCGTGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3685779‑3685928 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggatCGCGCCAGTGATGCAGGGTGCCCTGTAGCCAGGCGCCATCCACGGCCTTGGTAGGCGCAACCTGTTGCAGGAACCACAATGCGTGGGCGCGGTTGGAAAAGTAACGCCGGGGCATACCTTGACGGCGTTGTGCCCGGTAAACGGTGT  <  NC_002947/3685965‑3685819                                                                                                                                                                                                                                                                                                            GCCTGGAGCAAGAAGCATACCGCCGAGGTCGCCAAGGCCTACACCGTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTG‑CAACAGGTTGCGCCTACCAAGGCCGTGGA                                                                                                                                                      >  2:129556/1‑149                                             CGTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTG‑CAACAGGTTGCGCCTACCAAGGCCGTGGATCGCGCCAGTGATGCAGGGTGCCCTGTAGCCAGGCGCCATCCAC                                                                                                          <  6:194130/149‑1                                                                                        TTTTCCAACCGCGCCCACGCATTGTGGTTCCTGACAACAGGTTGCGCCTACCAAGGCCGTGGATCGCGCCAGTGATGCAGGGTGCCCTGTAGCCAGGCGCCATCCA                                                                                                           >  1:47865/1‑106                                                                                        TTTTCCAACCGCGCCCACGCATTGTGGTTCCTG‑CAACAGGTTGCGCCTACCAAGGCCGTGGATCGCGCCAGTGATGCAGGGTGCCCTGTAGCCAGGCGCCATCCA                                                                                                           <  2:47865/105‑1                                                                                                                                                     GATCGCGCCAGTGATGCAGGGTGCCCTGTAGCCAGGCGCCATCCACGGCCTTGGTAGGCGCAACCTGTTGCAGGAACCACAATGCGTGGGCGCGGTTGGAAAAGTAACGCCGGGGCATACCTTGACGGCGTTGTGCCCGGTAAACGGTG   <  3:65297/149‑1                                                                                                                                                      ATCGCGCCAGTGATGCAGGGTGCCCTGTAGCCAGGCGCCATCCACGGCCTTGGTAGGCGCAACCTGTTGCAGGAACCACAATGCGTGGGCGCGGTTGGAAAAGTAACGCCGGGGCATACCTTGACGGCGTTGTGCCCGGTAAACGGTGT  <  2:351629/149‑1                                                                                                                                                      ATCGCGCCAGTGATGCAGGGTGCCCTGTAGCCAGGCGCCATCCACGGCCTTGGTAGGCGCAACCTGTTGCAGGAACCACAATGCGTGGGCGCGGTTGGAAAAGTAACGCCGGGGCATACCTTGACGGCGTTGTGCCCGGTAAACGGTGT  <  4:197296/149‑1                                                                                                                                                                                                                                                                                                            GCCTGGAGCAAGAAGCATACCGCCGAGGTCGCCAAGGCCTACACCGTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTG‑CAACAGGTTGCGCCTACCAAGGCCGTGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3685779‑3685928 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggatCGCGCCAGTGATGCAGGGTGCCCTGTAGCCAGGCGCCATCCACGGCCTTGGTAGGCGCAACCTGTTGCAGGAACCACAATGCGTGGGCGCGGTTGGAAAAGTAACGCCGGGGCATACCTTGACGGCGTTGTGCCCGGTAAACGGTGT  <  NC_002947/3685965‑3685819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.