| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3881637 = | 67 (1.030) | 5 (0.080) | 4/248 | NT | 7.8% | coding (296/1416 nt) | oprN | multidrug RND transporter outer membrane protein OprN |
| ? | NC_002947 | 3881700 = | 55 (0.900) | coding (359/1416 nt) | oprN | multidrug RND transporter outer membrane protein OprN | |||||
CTGGCTTCGATCTGGCGCTGGATGCGCCCGAACAGGTCAAGCTCCCAGGCCATGTCCAGGCCCAGGTCGTAGCGCTCGCTATTGACCCGCTCGGTGGTCTGGCCGGGGATCTGGCCTTTGCCGAGATCGCTGCTGGCACGGCTGGTGACCACC‑‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3881790‑3881637‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccacc‑‑gAGCGGGTCAATAGCGAGCGCTACGACCTGGGCCTGGACATGGCCTGGGAGCTTGACCTGTTCGGGCGCATCCAGCGCCAGATCGAAGCCAGCGAAGCCCAGGAAGCGGTTGCCGCCGCCGACCTGCAACAGTTGCAGGTCAGC > NC_002947/3881700‑3881842 CTGGCTTCGATCTGGCGCTGGATGCGCCCGAACAGGTCAAGCTCCCAGGCCATGTCCAGGCCCAGGTCGTAGCGCTCGCTATTGACCCGCTCGGTGGTCTGGCCGGGGATCTGGCCTTTGCCGAGATCGCTGCTGGCACGGCTGGTGAC < 1:402503/149‑1CTGGCTTCGATCTGGCGCTGGATGCGCCCGAACAGGTCAAGCTCCCAGGCCATGTCCAGGCCCAGGTCGTAGCGCTCGCTATTGACCCGCTCGGTGGTCTGGCCGGGGATCTGGCCTTTGCCGAGATCGCTGCTGGCACGGCTGGTGAC > 8:288804/1‑149 TTCGATCTGGCGCTGGATGCGCCCGAACAGGTCAAGCTCCCAGGCCATGTCCAGGCCCAGGTCGTAGCGCTCGCTATTGACCCGCTCGGTGGTCTGGCCGGGGATCTGGCCTTTGCCGAGATCGCTGCTGGCACGGCTGGTGACCACC‑‑G > 8:357749/1‑149 GCTCGGTGGTCTGGCCGGGGATCTGGCCTTTGCCGAGATCGCTGCTGGCACGGCTGGTGACCACC‑‑GAGCGGGTCAATAGCGAGCGCTACGACCTGGGCCTGGACATGGCCTGGGAGCTTGACCTGTTCGGGCGCATCCAGCGC > 8:146500/1‑143 CGGTGGTCTGGCCGGGGATCTGGCCTTTGCCGAGATCGCTGCTGGCACGGCTGGTGACCACCGGGAACGGGTCAATAGCGAGCGCTACGACCTGGGCCTGGACATGGACTGGGAGCTTGACCTGTTCGGGCGCATCCAGCGCCAGATC > 1:89408/1‑148 CGGTGGTCTGGCCGGGGATCTGGCCTTTGCCGAGATCGCTGCTGGCAAGGCTGGTGACCACCGGGAACGGGTCAATAGCGAGCGCTACGACCTGGGCCTGGACATGGCCTGGGAGCTTGACCTGTTCGGGCGCATCCAGCGCCAGATC > 1:94910/1‑148 CTGGCCGGGGATCTGGCCTTTGCCGAGATCGCTGCTGGCACGGCTGGTGACCACC‑‑GAGCGGGTCAATAGCGAGCGCTACGACCTGGGCCTGGACATGGCCTGGGAGC < 5:103518/107‑1 CTGGCCGGGGATCTGGCCTTTGCCGAGATCGCTGCTGGCACGGCTGGTGACCACC‑‑GAGCGGGTCAATAGCGAGCGCTACGACCTGGGCCTGGACATGGCCTGGGAGC > 6:103518/1‑107 GACCACC‑‑GAGCGGGTCAATAGCGAGCGCTACGACCTGGGCCTGGACATGGCCTGGGAGCTTGACCTGTTCGGGCGCATCCAGCGCCAGATCGAAGCCAGCGAAGCCCAGGAAGCGGTTGCCGCCGCCGACCTGCAACTGTTGCAGGTCg < 5:276520/149‑2 GACCACC‑‑GAGCGGGTCAATAGCGAGCGCTACGACCTGGGCCTGGACATGGCCTGGGAGCTTGACCTGTTCGGGCGCATCCAGCGCCAGATCGAAGCCAGCGAAGCCCAGGAAGCGGTTGCCGCCGCCGACCTGCAACAGTTGCAGGTCA < 3:153501/149‑1 GACCACC‑‑GAGCGGGTCAATAGCGAGCGCTACGACCTGGGCCTGGACATGGCCTGGGAGCTTGACCTGTTCGGGCGCATCCAGCGCCAGATCGAAGCCAGCGAAGCCCAGGAAGCGGTTGCCGCCGCCGACCTGCAACAGTTGCAGGTCA < 5:307039/149‑1 GACCACC‑‑GAGCGGGTCAATAGCGAGCGCTACGACCTGGGCCTGGACATGGCCTGGGAGCTTGACCTGTTCGGGCGCATCCAGCGCCAGATCGAAGCCAGCGAAGCCCAGGAAGCGGTTGCCGCCGCCGACCTGCAACAGTTGCAGGTCA < 7:168334/149‑1 CCACC‑‑GAGCGGGTCAATAGCGAGCGCTACGACCTGGGCCTGGACATGGCCTGGGAGCTTGACCTGTTCGGGCGCATCCAGCGCCAGATCGAAGCCAGCGAAGCCCAGGAAGCGGTTGCCGCCGCCGACCTGCAACAGTTGCAGGTCAGC < 2:402503/149‑1 CACC‑‑GAGCGGGTCAATAGCGAGCGCTACGACCTGGGCCTGGACATGGCCTGGGAGCTTGACCTGTTCGGGCGCATCCAGCGCCAGATCGAAGCCAGCGAAGCCCAGGAAGCGGTTGCCGCCGCCGACCTGCAACAGTTG < 1:384154/139‑1 CACC‑‑GAGCGGGTCAATAGCGAGCGCTACGACCTGGGCCTGGACATGGCCTGGGAGCTTGACCTGTTCGGGCGCATCCAGCGCCAGATCGAAGCCAGCGAAGCCCAGGAAGCGGTTGCCGCCGCCGACCTGCAACAGTTG > 2:384154/1‑139 CTGGCTTCGATCTGGCGCTGGATGCGCCCGAACAGGTCAAGCTCCCAGGCCATGTCCAGGCCCAGGTCGTAGCGCTCGCTATTGACCCGCTCGGTGGTCTGGCCGGGGATCTGGCCTTTGCCGAGATCGCTGCTGGCACGGCTGGTGACCACC‑‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3881790‑3881637‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccacc‑‑gAGCGGGTCAATAGCGAGCGCTACGACCTGGGCCTGGACATGGCCTGGGAGCTTGACCTGTTCGGGCGCATCCAGCGCCAGATCGAAGCCAGCGAAGCCCAGGAAGCGGTTGCCGCCGCCGACCTGCAACAGTTGCAGGTCAGC > NC_002947/3881700‑3881842 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |