New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4317676 =	55 (0.850)	4 (0.070)	4/246	NT	6.8%	coding (209/273 nt)	PP_5628	hypothetical protein
	?	NC_002947	4317723 =	58 (0.960)					coding (256/273 nt)	PP_5628	hypothetical protein

CCCTTGCTTGCATCGTGCAGCAGGGAACCCAGCAGGAGCGAGTGCAAGGGCGAGTGTGGCCGTGACCACGAAAGAATGGACATGGGCTGCATCAAGCTCCTGTGGACGTTGGCCTCGCCTGCCGGCGATCGGCGCACAGTGGCTGGAGCGAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4317831‑4317676 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgaggccaACGTCCACAGGAGCTTGAT‑GCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCC  >  NC_002947/4317723‑4317869                                                                                                                                                                                                                                                                                                                  CCCTTGCTTGCATCGTGCAGCAGGGAACCCAGCAGGAGCGAGTGCAAGGGCGAGTGTGGCCGTGACCACGAAAGAATGGACATGGGCTGCATCAAGCTCCTGTGGACGTTGGCCTCGCCTGCCGGCGATCGGCGCACAGTGGCTGGAGC                                                                                                                                                             >  3:250594/1‑149  CCTTGCTTGCATCGTGCAGCAGGGAACCCAGCAGGAGCGAGTGCAAGGGCGAGTGTGGCCGTGACCACGAAAGAATGGACATGGGCTGCATCAAGCTCCTGTGGACGTTGGCCTCGCCTGCCGGCGATCGGCGCACAGTGGCTGGAGC                                                                                                                                                             <  7:185837/148‑1   CTTGCTTGCATCGTGCAGCAGGGAACCCAGCAGGAGCGAGTGCAAGGGCGAGTGTGGCCGTGACCACGAAAGAATGGACATGGGCTGCATCAAGCTCCTGTGGACGTTGGCCTCGCCTGCCGGCGATCGGCGCACAGTGGCTGGAGC                                                                                                                                                             >  5:273444/1‑147        TTGCATCGTGCAGCAGGGAACCCAGCAGGAGCGAGTGCAAGGGCGAGTGTGGCCGTGACCACGAAAGAATGGACATGGGCTGCATCAAGCTCCTGTGGACGTTGGCCTCGCCTGCCGGCGATCGGCGCACAGTGGCTGGAGCGAGGC                                                                                                                                                        >  1:28955/1‑147                        GGAACCCAGCAGGAGCGAGTGCAAGGGCGAGTGTGGCCGTGACCACGAAAGAATGGACATGGGCTGCATCAAGCTCCTGTGGACGTTGGCCTCGCCTGCCGGCGATCGGCGCACAGTGGCTGGAGCGAGG                                                                                                                                                         <  7:382373/130‑1                        GGAACCCAGCAGGAGCGAGTGCAAGGGCGAGTGTGGCCGTGACCACGAAAGAATGGACATGGGCTGCATCAAGATCCTGTGGACGTTGGCCTCGCCTGCCGGCGATCGGCGCACAGTGGCTGGAGCGAGG                                                                                                                                                         >  8:382373/1‑130                                    GAGCGAGTGCAAGGGCGAGTGTGGCCGTGACCACGAAAGAATGGACATGGGCTGCATCAAGCTCCTGTGGACGTTGGCCTCGCCTGCCGGCGATCGGCGCACAGTGGTTGGAGCGA                                                                                                                                                           <  5:45455/116‑1                                    GAGCGAGTGCAAGGGCGAGTGTGGCCGTGACCACGAAAGAATGGACATGGGCTGCATCAAGCTCCTGTGGACGTTGGCCTCGCCTGCCGGCGATCGGCGCACAGTGGTTGGAGCGA                                                                                                                                                           >  6:45455/1‑116                                                                                                              TGGCCTCGCCTGCCGGCGATCGGCGCACAGTGGCTGGAGCGAGGCCAACGTCCACCGGAGCTTGAT‑GCAGCCCCTGTCGATTCTTTCGTGGTCACGGCCACACTCGCCCATGCACTCGCTCCTGCTGGGTTCCCTGATGCACGATGCAA                                               >  7:316836/1‑149                                                                                                                GCCTCGCCTGCCGGCGATCGGCGCACAGTGGCTGGAGCGAGGCCAACGTCCACAGGAGCTTGAT‑GCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGG                                                                    <  1:296634/126‑1                                                                                                                GCCTCGCCTGCCGGCGATCGGCGCACAGTGGCTGGAGCGAGGCCAACGTCCACAGGAGCTTGAT‑GCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGG                                                                    >  2:296634/1‑126                                                                                                                                      GCAGAGTGGCTGGAGCGAGGCGAACTTCCACTGGAGCTTGAT‑GCAGCCCATGTCGATTCTTTCGTGGTCACGGCCACACTCGGCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGA                       <  8:316836/149‑1                                                                                                                                                    GCGAGGCCAACGTCCACAGGAGCTTGATGGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCT          >  1:30570/1‑149                                                                                                                                                      GAGGCCAACGTCCACAGGAGCTTGAT‑GCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGAC       >  3:315821/1‑149                                                                                                                                                      GAGGCCAACGTCCACAGGAGCTTGAT‑GCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGAC       <  4:134347/149‑1                                                                                                                                                           CAACGTCCACAGGAACTTGAT‑GCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCC  >  7:112304/1‑149                                                                                                                                                                                                                                                                                                                  CCCTTGCTTGCATCGTGCAGCAGGGAACCCAGCAGGAGCGAGTGCAAGGGCGAGTGTGGCCGTGACCACGAAAGAATGGACATGGGCTGCATCAAGCTCCTGTGGACGTTGGCCTCGCCTGCCGGCGATCGGCGCACAGTGGCTGGAGCGAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4317831‑4317676 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgaggccaACGTCCACAGGAGCTTGAT‑GCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCC  >  NC_002947/4317723‑4317869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.