New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4341102	55 (0.850)	3 (0.050)	3/246	NT	5.3%	coding (757/1026 nt)	PP_3814	polyamine ABC transportersubstrate‑binding protein
	?	NC_002947	= 4341141	57 (0.940)					coding (796/1026 nt)	PP_3814	polyamine ABC transportersubstrate‑binding protein

CATCGTCTGGTGGGGCGGTGGCGCCCAGTCACAGCAGTTGCTGGCATCAGGTGAAGCCTCGCTCGGCCAGTTCTGGAATGGCCGTGTCTACGCCCTGCAGCAAGACGGTGCACCGGTGGGTGTGAGCTGGAAGCAGAACCTGGTCATGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4340951‑4341102 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatggccgCTTCCTTGTTCTTGGCGCCTTTGGGGATGACCAGGAAGTCGGCCA  <  NC_002947/4341141‑4341097                                                                                                                                                                                                       CATCGTCTGGTGGGGCGGTGGCGCCCAGTCACAGCAGTTGCTGGCATCAGGTGAAGCCTCGCTCGGCCAGTTCTGGAATGGCCGTGTCTACGCCCTGCAGCAAGACGGTGCACCGGTGGGTGTGAGCTGGAAGCAGAACCTGGTCATGG                                                  <  4:330395/149‑1                                                 AGGTGAAGCCTCGCTCGGCCAGTTCTGGAATGGCCGTGTCTACGCCCTGCAGCAAGACGGTGCACCGGTGGGTGTGAGCTGGAAGCAGAACCTGGTCATGGCCGCTTCCTTGTTCTTGGCGCCTTTGGGGATGACCAGGAAGTCGGCCA  <  3:317630/149‑1                                                                                         TACGCCCTGCAGCAAGACGGTGCACCGGTGGGTGTGAGCTGGAAGCAGAACCTGGTCATGGCCGCTTCCTTGTTCTTGGCGCCTTTGGGGATGACCAGGAAGTCGG     <  7:67333/106‑1                                                                                         TACGCCCTGCAGCAAGACGGTGCACCGGTGGGTGTGAGCTGGAAGCAGAACCTGGTCATGGCCGCTTCCTTGTTCTTGGCGCCTTTGGGGATGACCAGGAAGTCGG     >  8:67333/1‑106                                                                                                                                                                                                       CATCGTCTGGTGGGGCGGTGGCGCCCAGTCACAGCAGTTGCTGGCATCAGGTGAAGCCTCGCTCGGCCAGTTCTGGAATGGCCGTGTCTACGCCCTGCAGCAAGACGGTGCACCGGTGGGTGTGAGCTGGAAGCAGAACCTGGTCATGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4340951‑4341102 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatggccgCTTCCTTGTTCTTGGCGCCTTTGGGGATGACCAGGAAGTCGGCCA  <  NC_002947/4341141‑4341097

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.