New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4461580	52 (0.800)	3 (0.050)	3/248	NT	6.2%	coding (68/2028 nt)	PP_3955	permease
	?	NC_002947	= 4461605	42 (0.690)					coding (93/2028 nt)	PP_3955	permease

CCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4461426‑4461580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgtggcGATCTGGAAAACCGAAAAGACCAATGCCACGGCAAAAAGCGCGGCAGGCCAGCGATCGGTGCTGGCGTGAAGACCTTGCGCGGTATCACTCATACGCTGCTCCATGGCTCAGGAATGTCATCAGGGGAGCAGGTTTTTCTCCT  <  NC_002947/4461605‑4461463                                                                                                                                                                                                                                                                                                            CCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTG                                                                                                                                                        <  5:194666/148‑1    ATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGT                                                                                                                                                    >  2:63203/1‑149    ATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGT                                                                                                                                                    >  3:367966/1‑149                                     AAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCGATCTGGAAAACCGAAAAGACCAATGCCAC                                                                                                                   >  6:368911/1‑149                                        GAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCGATCTGGAAAACCGAAAAGACCAATGCCACGGC                                                                                                                <  5:368911/149‑1                                        GAGAAAAACCTGCTAGCCTGATGACATTCCTGAGCCTTGGAGCAGCGTATGAGGGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCGATCTGGAAAACCGAATAGACCAATGCCACGG                                                                                                                 <  8:193261/148‑1                                                                                                                                                      CGTGGCGATCTGGAAAACCGAAAAGACCAATGCCACGGCAAAAAGCGCGGCAGGCCAGCGATCGGTGCTGGCGTGAAGACCTTGCGCGGTATCACTCATACGCTGCTCCATGGCTCAGGAATGTCATCAGGGGAGCAGGTTTTTCTCCT  <  6:61143/149‑1                                                                                                                                                                                                                                                                                                            CCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4461426‑4461580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgtggcGATCTGGAAAACCGAAAAGACCAATGCCACGGCAAAAAGCGCGGCAGGCCAGCGATCGGTGCTGGCGTGAAGACCTTGCGCGGTATCACTCATACGCTGCTCCATGGCTCAGGAATGTCATCAGGGGAGCAGGTTTTTCTCCT  <  NC_002947/4461605‑4461463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.