New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4609857	56 (0.860)	4 (0.070)	4/244	NT	7.2%	coding (344/876 nt)	PP_4081	type IV/VI secretion system protein
	?	NC_002947	= 4609877	52 (0.870)					coding (364/876 nt)	PP_4081	type IV/VI secretion system protein

CTCAGGGGTGGCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4609700‑4609857 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacgccagcaACTGAGCGGGCTCATAGCCGTGCTGGCGTATTTCTTCCCGGATGCTGTCGATCTGAATACGCACTTGCTGATGCACATCTTTGATGTTGGGCAGTTCATCGAGCGTGCGCAGGCGCATTACCAGCCCGAACAAGGGTGCCGCAGCATC  <  NC_002947/4609877‑4609730                                                                                                                                                                                                                                                                                                                    CTCAGGGGTGGCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAAT                                                                                                                                                               <  2:119620/149‑1  TCAGGGGTGGCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATA                                                                                                                                                              >  8:88011/1‑149    AGGGGTGGCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATAC                                                                                                                                                             <  4:320363/148‑1      GGGTGGCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCC                                                                                                                                                          <  7:88011/149‑1                GCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCA                                                                                                                                                         <  1:239627/140‑1                GCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCA                                                                                                                                                         >  2:239627/1‑140                                          ACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTATT                                                                                                                      <  6:26029/149‑1                                             CTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATTAAAGATGTGCATCAGCAAGTGGGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCAACTGAGGGGGCTCATAGCCGTGCTGGCGTATTTCT                                                                                                                   <  1:230987/149‑1                                                    GGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTATTTC                                                                                                                    <  5:213293/141‑1                                                    GGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTATTTC                                                                                                                    >  6:213293/1‑141                                                                                                                                                    gtgCGCCAGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTATTTCTTCCCGTATGCTGTCGATCTGAATACGCACTTGCTGATGCACATCTTT                                                                    <  4:19088/90‑1                                                                                                                                                         CCAGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTATTTCTTCCCGGATGCTGTCGATCTGAATACGCACTTGCTGATGCACATCTTTGAT                                                                 >  5:159951/1‑91                                                                                                                                                         CCAGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTATTTCTTCCCGGATGCTGTCGATCTGAATACGCACTTGCTGATGCACATCTTTGAT                                                                 <  6:159951/91‑1                                                                                                                                                           AGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTATTTCTTCCCGGATGCTGTCGATCTGAATACGCACTTGCTGATGCACATCTTTGATGTTGGGCAGTTCATCGAGCGTGCGCAGGCGCATTACCAGCCCGAACAAGGGTGCCGCAG      >  2:344612/1‑148                                                                                                                                                              AACTGAGCGGGCTCATAGCCGTGCTGGCGTATTTCTTCCCGGATGCTGTCGATCTGAATACGCACTTGCTGATGCACATCTTTGATGTTGGGCAGTTCATCGAGCGTGCGCAGGCGCATTACCAGCCCGAACAAGGGTGCCGCAGCATC  <  3:390795/149‑1                                                                                                                                                                                                                                                                                                                    CTCAGGGGTGGCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4609700‑4609857 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacgccagcaACTGAGCGGGCTCATAGCCGTGCTGGCGTATTTCTTCCCGGATGCTGTCGATCTGAATACGCACTTGCTGATGCACATCTTTGATGTTGGGCAGTTCATCGAGCGTGCGCAGGCGCATTACCAGCCCGAACAAGGGTGCCGCAGCATC  <  NC_002947/4609877‑4609730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.