| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5017985 | 54 (0.830) | 4 (0.060) | 3/252 | NT | 6.8% | coding (872/1473 nt) | gabD‑II | succinate‑semialdehyde dehydrogenase |
| ? | NC_002947 | = 5018018 | 58 (0.930) | coding (839/1473 nt) | gabD‑II | succinate‑semialdehyde dehydrogenase | |||||
TTACCCTAGTCATTGGGCCGATATCGACGCCCTCTTCAAGGCCATGGCCAACGCGTAACTTCTCGGTGGCCTTGGTGAATTCCTCTACGAATTGACCGTAGATGTTGCGATGCACATAGATGCGATTCGCGCCCAGGCAATCTTGACCTGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5017833‑5017985‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaggCTGTCGAAGGCTGCATTGGCGCCAAGTTCGCAACCTCAGGTCAAGATTGCCTGGGCGCGAATCGCATCTATGTGCATCGCAACATCTACGGTCAATTCGTAGAGGAATTCACCAAGGCCACCGAGAAGTTACGCGTTGGCCATGG < NC_002947/5018018‑5017874 TTACCCTAGTCATTGGGCCGATATCGACGCCCTCTTCAAGGCCATGGCCAACGCGTAACTTCTCGGTGGCCTTGGTGAATTCCTCTACGAATTGACCGTAGATGTTGCGATGCACATAGATGCGATTCGCGCCCAGGCAATCTTGACCT < 5:360741/149‑1 ACCCTAGTCATTGGGCCGATATCGACGCCCTCTTCAAGGCCATGGCCAACGCGTAACTTCTCGGTGGCCTTGGTGAATTCCTCTACGAATTGACCGTAGATGTTGCGATGCACATAGATGCGATTCGCGCCCAGGCAATCTTGACCTG < 4:279678/148‑1 CCCTAGTCATTGGGCCGATATCGACGCCCTCTTCAAGGCCATGGCCAACGCGTAACTTCTCGGTGGCCTTGGTGAATTCCTCTACGAATTGACCGTAGATGTTGCGATGCACATAGATGCGATTCGCGCCCAGGCAATCTTGACCTGA < 8:95215/148‑1 CCTAGTCATTGGGCCGATATCGACGCCCTCTTCAAGGCCATGGCCAACGCGTAACTTCTCGGTGGCCTTGGTGAATTCCTCTACGAATTGACCGTAGATGTTGCGATGCACATAGATGCGATTCGCGCCCAGGCAATCTTGACCTGAGG > 6:42487/1‑149 AGGCCATGGCCAACGCGTAACTTCTCGGTGGCCTTGGTGAATTCCTCTACGAATTGACCGTAGATGTTGCGATGCACATAGATGCGATTCGCGCCCAGGCAATCTTGACCTGAGGCTGTCGAAGGCTGCATTGGCGCCAAGTTCGCAAC > 5:125252/1‑149 ATGGCCAACGCGTAACTTCTCGGTGGCCTTGGTGAATTCCTCTACGAATTGACCGTAGATGTTGCGATGCACATAGATGCGATTCGCGCCCAGGCAATCTTGACCTGAGGCTGTCGAAGGCTGCATTGGCGCCAAGTTCGCAACCTCAG < 6:125252/149‑1 GCCCACGCGTAACTTCTCGGGGGCCTTGGGGAAGTCCTCTACGAATGGACCGTAGATGTTGCGATGCACATAGATGCGATTCGCGCCCAGGCAATCTTGACCGGAGGCTGTCGAAGGCTGCATTGGCGCCAAGTTCGCAACCTCAGGTC < 1:238165/149‑1 GCCAACGCGTAACTTCTCGGTGGCCTTGGTGAATTCCTCTACGAATTGACCGTAGATGTTGCGATGCACATAGATGCGATTCGCGCCCAGGCAATCTTGACCTGAGGCTGTCGAAGGCTGCATTGGCGCCAAGTTCGCAACCTCAGGTC < 5:289316/149‑1 GAGGCTGTCGAAGGCTGCATTGGCGCCAAGTTCGCAACCTCAGGTCAAGATTGCCTGGGCGCGAATCGCATCTATGTGCATCGCAACATCTACGGTCAATTCGTAGAGGAATTCACCAAGGCCACCGAGAAGTTACGCGTTGGCCATGG > 2:402827/1‑149 AGGCTGTCGAAGGCTGCATTGGCGCCAAGTTCGCAACCTCAGGTCAAGATTGCCTGGGCGCGAATCGCA > 5:342180/1‑69 AGGCTGTCGAAGGCTGCATTGGCGCCAAGTTCGCAACCTCAGGTCAAGATTGCCTGGGCGCGAATCGCA < 6:342180/69‑1 TTACCCTAGTCATTGGGCCGATATCGACGCCCTCTTCAAGGCCATGGCCAACGCGTAACTTCTCGGTGGCCTTGGTGAATTCCTCTACGAATTGACCGTAGATGTTGCGATGCACATAGATGCGATTCGCGCCCAGGCAATCTTGACCTGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5017833‑5017985‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaggCTGTCGAAGGCTGCATTGGCGCCAAGTTCGCAACCTCAGGTCAAGATTGCCTGGGCGCGAATCGCATCTATGTGCATCGCAACATCTACGGTCAATTCGTAGAGGAATTCACCAAGGCCACCGAGAAGTTACGCGTTGGCCATGG < NC_002947/5018018‑5017874 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |