| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5094749 | 61 (0.940) | 4 (0.060) | 4/258 | NT | 6.3% | coding (457/699 nt) | hisM | histidine/lysine/arginine/ornithine ABC transporter permease |
| ? | NC_002947 | = 5094777 | 59 (0.930) | coding (429/699 nt) | hisM | histidine/lysine/arginine/ornithine ABC transporter permease | |||||
CGCCCGCCGTGATATAGGCCTCGAAAGGCAGGTAGTACTGGGCATTGACCGTGCGCGCAGCACCGGTGATGTCGATCAGGGTGACGATCGACGCCAGGCTGGTGGTCTGCAGCATCATGATCACTTCATTGCTGTACTGCGGCAGTGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5094599‑5094749‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgCCGCATCCTGCTGCCTTCGGCACTGCGTCGGGCACTGCCGCAGTACAGCAATGAAGTGATCATGATGCTGCAGACCACCAGCCTGGCGTCGATCGTCACCCTGATCGACATCACCGGTGCTGCGCGCACGGTCAATGCCCAGTAC < NC_002947/5094777‑5094633 CGCCCGCCGTGATATAGGCCTCGAAAGGCAGGTAGTACTGGGCATTGACCGTGCGCGCAGCACCGGTGATGTCGATCAGGGTGACGATCGACGCCAGGCTGGTGGTCTGCAGCATCATGATCACTTCATTGCTGTACTGCGGCAGTGCC < 8:262638/149‑1 GCCCGCCGTGATATAGGCCTCGAAAGGCAGGTAGTACTGGGCATTGACCGTGAGCGCAGCACCGGTCATGTCGATCAGGGTGACGATCGACGCCAGGCAGGTGGTCTGCCGCATCATGATCACTTCATTGCTGTACTGCGGCAGTGCCC > 8:340351/1‑149 AGGCCTCGAAAGGCAGGTAGTACTGGGCATTGACCGTGCGCGCAGCACCGGTGATGTCGATCAGGGTGACGATCGACGCCAGGCTGGTGGTCTGCAGCATCATGATCACTTCATTGCTGTACTGCGGCAGTGCCCGCCGCATCCTGCTG > 7:163606/1‑149 GGCATTGACCGTGCGCGCAGCACCGGTGATGTCGATCAGGGTGACGATCGACGCCAGGCTGGTGGTCTGCAGCATCATGATCACTTCATTGCTGTACTGCGGCAGTGCCCGCCGCATCCTGCTGCCTTCGGCACTGCGTCGGGCACTG < 8:163606/148‑1 GACGCCAGGCTGGTGGTCTGCAGCATCATGATCACTTCATTGCTGTACTGCGGCAGTGCCCGCCGCATCCTGCTGCCTTCGGCACTGCGTCGGG > 1:129005/1‑94 GACGCCAGGCTGGTGGTCTGCAGCATCATGATCACTTCATTGCTGTACTGCGGCAGTGCCCGCCGCATCCTGCTGCCTTCGGCACTGCGTCGGG < 2:129005/94‑1 CCGCCGCATCCTGCTGCCTTCGGCACTGCGTCGGGCACTGCCGCAGTACAGCAATGAAGTGATCATGATGCTGCAGACCACCAGCCTGGCGTCGATCGTCACCCTGATCGACATCACCGGTGCTGCGCGCACGGTCAATGCCCAGTAC > 3:153050/1‑148 CGCCCGCCGTGATATAGGCCTCGAAAGGCAGGTAGTACTGGGCATTGACCGTGCGCGCAGCACCGGTGATGTCGATCAGGGTGACGATCGACGCCAGGCTGGTGGTCTGCAGCATCATGATCACTTCATTGCTGTACTGCGGCAGTGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5094599‑5094749‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgCCGCATCCTGCTGCCTTCGGCACTGCGTCGGGCACTGCCGCAGTACAGCAATGAAGTGATCATGATGCTGCAGACCACCAGCCTGGCGTCGATCGTCACCCTGATCGACATCACCGGTGCTGCGCGCACGGTCAATGCCCAGTAC < NC_002947/5094777‑5094633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |