New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 528842324 (0.370)3 (0.060) 3/204 NT 16.9% intergenic (‑104/+80) PP_4660/mdaB LysR family transcriptional regulator/drug activity modulator B
?NC_002947 = 5288457 11 (0.220)intergenic (‑138/+46) PP_4660/mdaB LysR family transcriptional regulator/drug activity modulator B

TCGGCAGCAGCGGAAATCGAGCCGCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5288246‑5288423
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggcttgcccgctcccacaGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGT‑‑GGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACAGGCCCTGATGTGAAAAC  <  NC_002947/5288457‑5288312
                                                                                                                                                                                                                                                                                                                                      
TCGGCAGCAGCGGAAATCGAGCCGCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGG                                                                                                                                                                                   <  8:371579/149‑1
  GGCAGCAGCGGAAATTGAGCCGCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGC                                                                                                                                                                                 <  3:89270/149‑1
  GGCAGCAGCGGAAATCGAGCCGCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCATGGCTTGTGGTTGGTCTGTGCTAGGATTAGATATCCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGG                                                                                                                                                                                   <  4:136668/147‑1
    CAGCAGCGGAAATCGAGCCGCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCC                                                                                                                                                                                >  6:119609/1‑148
       CAGCGGAAATCGAGCCGCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTT                                                                                                                                                                            >  5:145912/1‑149
       CAGCGGAAATCGAGCCGCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTT                                                                                                                                                                            >  4:111120/1‑149
            GAAATCGAGCCGCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGG                                                                                                                                                                       <  6:199553/149‑1
                TCGAGCCGCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTT                                                                                                                                                                   <  6:392129/149‑1
                          GTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCC                                                                                                                                                         <  4:318511/149‑1
                           TCGATGACGGCGACGAATACCTGGAGGTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATACCCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCA                                                                                                                                                        <  5:414380/149‑1
                             GATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCAC                                                                                                                                                       >  4:186166/1‑148
                                              CCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGC                                                                                                                                                             <  6:83879/125‑1
                                              CCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGC                                                                                                                                                             >  5:83879/1‑125
                                               CTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTACCGGCCTCTTCGC                                                                                                                                                                         <  4:246035/112‑1
                                                                        cCATCAGGGCCTGTGGTTGGGCTGTGCAAGGATTAGATAACCACTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGT‑‑GGGAGC                                                                                                         <  3:263471/148‑1
                                                                                                           GATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTATATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGT‑‑GGGAGCGGG                                                                                                      >  1:4752/1‑117
                                                                                                           GATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTATATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGT‑‑GGGAGCGGG                                                                                                      <  2:4752/117‑1
                                                                                                                                                          ggaGCGGGCAAGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGGGAGCGGGCAAGCCAGCGAAGAGGCCCATACAGGCGACGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACC                          >  1:325259/4‑148
                                                                                                                                                             GCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGT‑‑GGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCA                     >  8:213991/1‑148
                                                                                                                                                             GCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGT‑‑GGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCGCGACAAGCGGTTATCTAATCCTTGCACAGGCCAACCA                     >  8:356834/1‑148
                                                                                                                                                                 GCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTACAGTACTTGT‑‑GGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACAGGC                >  3:302638/1‑149
                                                                                                                                                                      CCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGT‑‑GGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACAGGCCCTGA           >  3:186166/1‑149
                                                                                                                                                                       CCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGT‑‑GGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACAGGCCCTGAT          >  2:273580/1‑149
                                                                                                                                                                       CCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGT‑‑GGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACAGGCCCTGAT          <  7:213991/149‑1
                                                                                                                                                                            CCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGT‑‑GGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACAGGCCCTGATGTGA      >  5:356258/1‑148
                                                                                                                                                                             CCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGT‑‑GGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACAGGCCCTGATGTGAA     >  5:7930/1‑148
                                                                                                                                                                              CACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGT‑‑GGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACAGGCCCTGATGTGAAAA   >  8:31670/1‑149
                                                                                                                                                                               ACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGT‑‑GGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACAGGCCCTGATGTGAAAAC  >  3:111120/1‑149
                                                                                                                                                                                                                                                                                                                                      
TCGGCAGCAGCGGAAATCGAGCCGCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5288246‑5288423
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggcttgcccgctcccacaGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGT‑‑GGGAGCGGGCAAGCCCGCGAAGAGGCCCATACAGGCGCCGCTGGACTTGGCCTCGACAAGCGGTTATCTAATCCTTGCACAGACCAACCACAGGCCCTGATGTGAAAAC  <  NC_002947/5288457‑5288312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.