New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5295494	83 (1.280)	5 (0.080)	5/250	NT	6.0%	intergenic (+25/+101)	PP_4668/PP_4669	LysR family transcriptional regulator/OmpA family protein
	?	NC_002947	= 5295563	79 (1.280)					intergenic (+94/+32)	PP_4668/PP_4669	LysR family transcriptional regulator/OmpA family protein

TTGCGCAAGTTGAAGCGCATTACCCTGCTGTGGGATTACATCCGCGGGGTGACCGAGGCGAATGCGCCGTTGTTGATGGGGCAAACCCGCGAGATGCGCTTTGCCCAGGACTGATGGGCCTGCGCATTTCCGAG‑CCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5295356‑5295494 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ag‑cccccTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGGCTCGGAAATGCGCAGGCCCATCAGTCCTGGGCAAAGCGCATCTCGCGGGTTTGCCCCATCAACAACGGCGCATT  <  NC_002947/5295563‑5295416                                                                                                                                                                                                                                                                                                  TTGCGCAAGTTGAAGCGCATTACCCTGCTGTGGGATTACATCCGCGGGGTGACCGAGGCGAATGCGCCGTTGTTGATGGGGCAAACCCGCGAGATGCGCTTTGCCCAGGACTGATGGGCCTGCGCATTTCCGAG‑CCCCCTGTAGGCGCG                                                                                                                                            >  1:362928/1‑149                                                             AATGCGCCGTTGTTGATGGGGCAAACCCGCGAGATGCGCTTTGCCCAGGACTGATGGGCCTGCGCATTTCCGAGCCCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAG                                                                                 <  5:194776/149‑1                                                              ATGCGCCGTTGTTGATGGGGCAAACCCGCGAGATGCGCTTTGCCCAGGACTGATGGGCCTGCGCATTTCCGAG‑CCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGG                                                                               <  2:362928/149‑1                                                                           GATGGGGCAAACCCGCGAGATGCGCTTTGCCCAGGACTGATGGGCCTGCGCATTTCCGAG‑CCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGG                                                                              >  3:136070/1‑137                                                                           GATGGGGCAAACCCGCGAGATGCGCTTTGCCCAGGACTGATGGGCCTGCGCATTTCCGAG‑CCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGG                                                                              <  4:136070/137‑1                                                                                                                                        CCCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGGCTCGGAAATGCGCAGGCCCATCAGTCCTGGGCAAAGCGCATCTCGCGG                            >  1:160682/1‑127                                                                                                                                         CCCCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGGCTCGGAAATGCGCAGGCCCATCAGTCCTGGGCAAAGCGCATCTCGCGGGTTTGCCCCATCAACAACGGCGC     <  7:111927/149‑1                                                                                                                                           CCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGGCTCGGAAATGCGCAGGCCCATCAGTCCTGGGCAAAGCGCATCTCGCGGGTTTGCCCCATCAACAACGGCGCAT   >  2:22668/1‑149                                                                                                                                           CCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGGCTCGGAAATGCGCAGGCCCATCAGTCCTGGGCAAAGCGCATCTCGCGGGTTTGCCCCATCAAC             <  3:148365/139‑1                                                                                                                                           CCTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGGCTCGGAAATGCGCAGGCCCATCAGTCCTGGGCAAAGCGCATCTCGCGGGTTTGCCCCATCAAC             >  4:148365/1‑139                                                                                                                                            CTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGGCTCGGAAATGCGCAGGCCCATCAGTCCTGGGCAAAGCGCATCTCGCGGGTTTGCCCCATCAACAACGGCGCATT  >  1:327644/1‑149                                                                                                                                            CTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGGCTCGGAAATGCGCAGGCCCATCAGTCCTGGGCAAAGCGCATCTCGCGGGTTTGCCCCATCAACAACGGCGCATT  >  7:156226/1‑149                                                                                                                                                                                                                                                                                                  TTGCGCAAGTTGAAGCGCATTACCCTGCTGTGGGATTACATCCGCGGGGTGACCGAGGCGAATGCGCCGTTGTTGATGGGGCAAACCCGCGAGATGCGCTTTGCCCAGGACTGATGGGCCTGCGCATTTCCGAG‑CCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5295356‑5295494 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ag‑cccccTGTAGGCGCGGGCAACGCGGTGTCTGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTTCTACAGGGGGGCTCGGAAATGCGCAGGCCCATCAGTCCTGGGCAAAGCGCATCTCGCGGGTTTGCCCCATCAACAACGGCGCATT  <  NC_002947/5295563‑5295416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.