New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 549220968 (1.040)8 (0.130) 7/250 NT 10.4% intergenic (‑10/+109) PP_5716/cobJ hypothetical protein/precorrin‑3B C17‑methyltransferase
?NC_002947 = 5492261 74 (1.200)intergenic (‑62/+57) PP_5716/cobJ hypothetical protein/precorrin‑3B C17‑methyltransferase

CTGCCTGTTGGCACCTTGCGTAGCCAAGGCATGACAAGCCTTTGCAGCATCGCGGTTTAGCTCACTCATTTGGTCGGGGAACACGAACAGATTCTTGTCCGGCAGAACCTGAAGCTGCAGCTTCTCTTTATCGGTCGTCATGGGAAAGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5492059‑5492209
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaggtc‑ACAGGTAGGTTTTCGGCTGGAGCTATTTGGCTCCAACCGTACCCTTCCTGGAGACCTTTCCCATGACGACCGATAAAGAGAAGCTGCAGCTTCAGGTTCTGCCGGACAAGAATCTGTTCGTGTTCCCCGACCAAATGAGTGAGCTA  <  NC_002947/5492261‑5492116
                                                                                                                                                                                                                                                                                                          
CTGCCTGTTGGCACCTTGCGTAGCCAAGGCATGACAAGCCTTTGCAGCATCGCGGTTTAGCTCACTCATTTGGTCGGGGAACACGAACAGATTCTTGTCCGGCAGAACCTGAAGCTGCAGCTTCTCTTTATCGGTCGTCATGGGAAAGG                                                                                                                                                       >  7:52024/1‑149
 TGCCTGTTGGCACCTTGCGTAGCCAAGGCATGACAAGCCTTTGCAGCATCGCGGTTTAGCTCACTCATTTGGTCGGGGAACACGAACAGATTCTTGTCCGGCAGAACCTGAAGCTGCAGCTTCTCTTTATCGGTCGTCATGGGAAAGGT                                                                                                                                                      >  5:287281/1‑149
 TGCCTGTTGGCACCTTGCGTAGCCAAGGCATGACAAGCCTTTGCAGCATCGCGGATTAGCTCACTCATTTGGTCGGGGAACACGAACAGATTCTTGTCCGGCAGAACCTGAAGCTGCAGCTTCTCTTTATCGGTCGTCATGGGAAAGGT                                                                                                                                                      >  1:104699/1‑149
  GCCTGTTGGCACCTTGCGTAGCCAAGGCATGACAAGCCTTTGCAGCATCGCGGTTTAGCTCACTCATTTGGTCGGGGAACACGAACAGATTCTTGTCCGGCAGAACCTGAAGCTGCAGCTTCTCTTTATCGGTCGTCATGGGAAAGGTC                                                                                                                                                     >  3:143074/1‑149
       TTGGCACCTTGCGTAGCCAAGGCATGACAAGCCTTTGCAGCATCGCGGTTTAGCTCACTCATTTGGTCGGGGAACACGAACAGATTCTTGTCCGGCAGAACCTGAAGCTGCAGCTTCTCTTTATCGGTCGTCATGGGAAA                                                                                                                                                         >  5:9886/1‑140
       TTGGCACCTTGCGTAGCCAAGGCATGACAAGCCTTTGCAGCATCGCGGTTTAGCTCACTCATTTGGTCGGGGAACACGAACAGATTCTTGTCCGGCAGAACCTGAAGCTGCAGCTTCTCTTTATCGGTCGTCATGGGAAA                                                                                                                                                         <  6:9886/140‑1
               TTGCGTAGCCAAGGCATGACAAGCCTTTGCAGCATCGCGGTTTAGCTCACTCATTTGGTCGGGGAACACGAACAGATTCTTGTCCGGCAGAACCTGAAGCTGCAGCTTCTCTTTATCGGTCGTCATGGGAAAGGTC‑ACAGGTAGGTTTT                                                                                                                                       >  4:387820/1‑149
                   GTAGCCAAGGCATGACAAGCCTTTGCAGCATCGCGGTTTAGCTCACTCATTTGGTCGGGGAACACGAACAGATTCTTGTCCGGCAGACCCTGAAGCTGCAGCTTCGCTTTATCGGTCGTCATGGGAAAGGTC‑ACAGGTAGGTTTTCGGC                                                                                                                                   >  5:58985/1‑149
                                                               ACTCCTGTGGTCGGGGAACACGAACAGATTCTTGTCCGGCAGAACCTGAAGCTGCAGCTTCTCTTTATCGGTCGTCAGGGGAAAGGTC‑ACAGGTAGGTTTTCGGCTGGAGCTATTTGGCTCCAACCGTACCCTTCCTGGAGACCTTTCC                                                                                       <  6:58985/149‑1
                                                               ACTCATTTGGTCGGGGAACACGAACAGATTCTTGTCCGGCAGAACCTGAAGCTGCAGCTTCTCTTTATCGGTCGTCATGGGAAAGGTC‑ACAGGTAGGTTTTCGGCTGGAGCTATTTGGCTCCAACCGTACCCTTCCTGGAGACCTTTC                                                                                        <  3:387820/148‑1
                                                                CTCATTTGGTCGGGGAACACGAACAGATTCTTGTCCGGCAGAACCTGAAGCTGCAGCTTCTCTTTATCGGTCGTCATGGGAAAGGTC‑ACAGGTAGGTTTTCGGCTGGAGCTATTTGGCTCCAACCGTACCCTTCCTGGAGACCTTTCCC                                                                                      <  7:301237/149‑1
                                                                CTCATTTGGTCGGGGAACACGAACAGATTCTTGTCCGGCAGAACCTGAAGCTGCAGCTTCTCTTTATCGGTCGTCATGGGAAAGGTC‑ACAGGTAGGTTTTCGGCTGGAGCTATTTGGCTCCAACCGTACCCTTCCTGGAGACCTTTCCC                                                                                      <  7:70748/149‑1
                                                                 TCATTTGGTCGGGGAACACGAACAGATTCTTGTCCGGCAGAACCTGAAGCTGCAGCTTCTCTTTATCGGTCGTCATGGGAAAGGTCTCCAGGTAGGTTTTCGGCTGGAGCTATTTGGCTCCAACCGTACCCTTCCTGGAGA                                                                                              >  3:193200/1‑141
                                                                 TCATTTGGTCGGGGAACACGAACAGATTCTTGTCCGGCAGAACCTGAAGCTGCAGCTTCTCTTTATCGGTCGTCATGGGAAAGGTCTCCAGGTAGGTTTTCGGCTGGAGCTATTTGGCTCCAACCGTACCCTTCCTGGAGA                                                                                              <  4:193200/141‑1
                                                                                                                                                AAAGGTC‑ACAGGTAGGTTTTCGGCTGGAGCTATTTGGCTCCAACCGTACCCTTCCTGGAGACCTTTCCCATGACGACCGATAAAGAGAAGCTGCAGCTTCAGGTTCTGCCGGACAAGAATCTGTTCGTGTTCCCCGACCAAATGAGT        >  6:233724/1‑147
                                                                                                                                                 AAGGTC‑ACAGGTAGGTTTTCGGCTGGAGCTATTTGGCTCCAACCGTACCCTTCCTGGAGACCTTTCCCATGACGACCGATAAAGAGAAGCTGCAGCTTCAGGTTCTGCCGGACAAGAATCTGTTCGTGTTCCCCGACCAAATGAGTGA      <  1:322874/148‑1
                                                                                                                                                    GTC‑ACAGGTAGGTTTTCGGCTGGAGCTATTTGGCTCCAACCGTACCCTTCCTGGAGACCTTTCCCATGACGACCGATAAAGAGAAGCTGCAGCTTCAGGTTCTGCCGGACAAGAATCTGTTCGTGTTCCCCGACCAAATGAGTGAGCT   >  8:33743/1‑148
                                                                                                                                                     TC‑ACAGGTAGGTTTTCGGCTGGAGCTATTTGGCTCCAACCGTACCCTTCCTGGAGACCTTTCCCATGACGACCGATAAAGAGAAGCTGCAGCTTCAGGTTCTGCCGGACAAGAATCTGTTCGTGTTCCCCGACCAAATGAGTGAGCTA  >  7:66611/1‑148
                                                                                                                                                                                                                                                                                                          
CTGCCTGTTGGCACCTTGCGTAGCCAAGGCATGACAAGCCTTTGCAGCATCGCGGTTTAGCTCACTCATTTGGTCGGGGAACACGAACAGATTCTTGTCCGGCAGAACCTGAAGCTGCAGCTTCTCTTTATCGGTCGTCATGGGAAAGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5492059‑5492209
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaggtc‑ACAGGTAGGTTTTCGGCTGGAGCTATTTGGCTCCAACCGTACCCTTCCTGGAGACCTTTCCCATGACGACCGATAAAGAGAAGCTGCAGCTTCAGGTTCTGCCGGACAAGAATCTGTTCGTGTTCCCCGACCAAATGAGTGAGCTA  <  NC_002947/5492261‑5492116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.