| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5519019 = | 56 (0.860) | 5 (0.080) | 4/244 | NT | 8.6% | coding (711/789 nt) | PP_4852 | AraC family transcriptional regulator |
| ? | NC_002947 | 5519086 = | 55 (0.920) | coding (644/789 nt) | PP_4852 | AraC family transcriptional regulator | |||||
AGCGAACGCACCCTGGCCCGCCAGTTTCTGCGCGAACTGGGCATCAGCTTTGGCGAATGGCGCCTGCGCCTGCGTTTTCTGCGTGCCATCGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGA‑CCTTGGCTACAGCAGCGCTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5519174‑5519019‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgcttcgATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGGCCCAGTCGGCCAGCGGGCGGTTGTCCCCCGGCTCGGCGCTGA > NC_002947/5519086‑5519233 AGCGAACGCACCCTGGCCCGCCAGTTTCTGCGCGAACTGGGCATCAGCTTTGGCGAATGGCGCCTGCGCCTGCGTTTTCTGCGTGCCATCGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGA‑CCTTGGCTACAGCAG < 8:203206/149‑1AGCGAACGCACCCTGGCCCGCCAGTTTCTGCGCGAACTGGGCATCAGCTTTGGCGAATGGCGCCTGCGCCTGCGTTTTCTGCGTGCCATCGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGA‑CCTTGGCTACAGCAG < 4:47471/149‑1 GCGAACGCACCCTGGCCCGCCAGTTTCTGCGCGAACTGGGCATCAGCTTTGGCGAATGGCGCCTGCGCCTGCGTTTTCTGCGTGCCATCGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGA‑CCTTGGCTACAGCAGC > 6:199279/1‑149 CGCACCCTGGCCCGCCAGTTTCTGCGCGAACTGGGCATCAGCTTTGGCGAATGGCGCCTGCGCCTGCGTTTTCTGCGTGCCAACGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGA‑CCTTGGCTACAGCAGCGCTTC > 2:144123/1‑149 GCACCCTGGCCCGCCAGTTTCTGCGCGAACTGGGCATCAGCTTTGGCGAATGGCGCCTGCGCCTGCGTTTTCTGCGTGCCATCGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGA‑CCTTGGCTACAGCAGCGCTTCG < 7:358119/149‑1 GCACCCTGGCCCGCCAGTCTCTGCGCGAACTGGGCATCAGCTTTGGCGAATGGCGCCTGCGCCTGCGTTTTCTGCGTGCCATCGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGA‑CCTTGGCTACAGCAGCGCTTCG < 7:98879/149‑1 CGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGA‑CCTTGGCTACAGCAGCGCTTCGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCG < 1:372562/138‑1 CGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGA‑CCTTGGCTACAGCAGCGCTTCGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCG > 2:372562/1‑138 GAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGAGGCTTGGCTACAGCAGCGCTTCGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCGGGCCAGGGTGC > 1:287371/1‑149 GAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGA‑CCTTGGCTACAGCAGCGCTTCGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCGGGCCAGGGTGCG > 7:324233/1‑149 CTTGGCTACAGCAGCGCTTCGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGGCCCAGTCGGCCAGCGGGCGGTT < 8:324233/149‑1 CAGCGCTTCGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGGCCCAGTCGGCCAGCGGGCGGTTGTCCCCCGGCT > 4:45711/1‑149 CAGCGCTTCGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGGCCCAGTCGGCCAGCGGGCGGTTGTCCCCCGGCT < 1:219116/149‑1 AGCGCTTCGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCACAGAAACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGGCCCAGTCGGCCAGCGGGCGGTTGTCCCCCGGCTC > 6:170181/1‑149 TTCGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGGCCCAGTCGGCCAGCGGGCGGTTGTCCCCCGGCTCGGCGC > 2:70130/1‑149 CGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGGCCCAGTCGGCCAGCGGGCGGTTGTCCCCCGGCTCGGCGCT < 4:3975/148‑1 CGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGGCCCAGTCGGCCAGCGGGCGGTTGTC < 5:84856/133‑1 CGATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGGCCCAGTCGGCCAGCGGGCGGTTGTC > 6:84856/1‑133 GATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGGCCCAGTCGGCCAGCGGGCGGTTGTCCCCCGGCTCGGCGCTGA < 3:286395/149‑1 AGCGAACGCACCCTGGCCCGCCAGTTTCTGCGCGAACTGGGCATCAGCTTTGGCGAATGGCGCCTGCGCCTGCGTTTTCTGCGTGCCATCGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGA‑CCTTGGCTACAGCAGCGCTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5519174‑5519019‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgcttcgATGGCACGCAGAAAACGCAGGCGCAGGCGCCATTCGCCAAAGCTGATGCCCAGTTCGCGCAGAAACTGGCGGGCCAGGGTGCGTTCGCTGACGTGTACGCGTGCGGCCCAGTCGGCCAGCGGGCGGTTGTCCCCCGGCTCGGCGCTGA > NC_002947/5519086‑5519233 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |