New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5519028	60 (0.920)	4 (0.070)	4/244	NT	6.8%	coding (702/789 nt)	PP_4852	AraC family transcriptional regulator
	?	NC_002947	= 5519075	55 (0.920)					coding (655/789 nt)	PP_4852	AraC family transcriptional regulator

TTTCATGGAGTGGTCTCCTTGGCTCCGCGCCCGATGCACGGTGATCGAGCTGAGTGTAGCCAAGAATGTTCAGCGCCCCGTCCGCGCCTGCCGGCGGTACTGCTCGGGCGTACACCGGGCCTGGCGCTGGAACATGGCGATGAACGCCGAAGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5518872‑5519028 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaagcgctgGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGACCTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACATTCTTGGC  <  NC_002947/5519075‑5518930                                                                                                                                                                                                                                                                                                                 TTTCATGGAGTGGTCTCCTTGGCTCCGCGCCCGATGCACGGTGATCGAGCTGAGTGTAGCCAAGAATGTTCAGCGCCCCGTCCGCGCCTCCCGGCGTTAATGCTCGGGCGTACACCGGCCATGCCGATGTAAAATGCCGATAAACCCC                                                                                                                                                             >  2:343316/1‑148     ATGGAGTGGTCTCCTTGGCTCCGCGCCCGATGCACGGTGATCGAGCTGAGTGTAGCCAAGAATGTTCAGCGCCCCGTCCGCGCCTGCCGGCGGTACTGCTCGGGCGTACACCGGGCCTGGCGCTGGAACATGGCGATGAACGCCGAAGC                                                                                                                                                        >  8:142527/1‑149        GAGTGGTCTCCTTGGCTCCGCGCCCGATGCACGGTGATCGAGCTGAGTGTAGCCAAGAATGTTCAGCGCCCCGTCCGCGCCTGCCGGCGGTACTGCTCGGGCGTACACCGGGCCTGGCGCTGGAACATGGCGATGAACGCCGAAGCGC                                                                                                                                                      <  1:216043/148‑1         AGTGGTCTCCTTGGCTCCGCGCCCGATGCACGGTGATCGAGCTGAGTGTAGCCAAGAATGTTCAGCGCCCCGTCCGCGCCTGCCGGCGGTACTGCTCGGGCGTACACCGGGCCTGGCGCTGGAACATGGCGATGAACGCCGAA                                                                                                                                                          <  1:366258/143‑1         AGTGGTCTCCTTGGCTCCGCGCCCGATGCACGGTGATCGAGCTGAGTGTAGCCAAGAATGTTCAGCGCCCCGTCCGCGCCTGCCGGCGGTACTGCTCGGGCGTACACCGGGCCTGGCGCTGGAACATGGCGATGAACGCCGAA                                                                                                                                                          >  2:366258/1‑143                   TTGGCTCCGCGCCCGATGCACGGTGATCGAGCTGAGTGTAGCCAAGAATGTTCAGCGCCCCGTCCGCGCCTGCCGGCGGTACTGCTCGGGCGTACACCGGGCCTGGCGCTGGAACATGGCGATGAACGCCGAAGCGCTGGAAGCCGGCC                                                                                                                                          >  5:40814/1‑149                                                           GCCAAGAATGTTCAGCGCCCCGTCCGCGCCTGCCGGCGGTACTGCTCGGGCGTACACCGGGCCTGGCGCTGGAACATGGCGATGAACGCCGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGACCTTGGCTACAGCAG                                                                                                  <  7:142527/149‑1                                                                 AATGTTCAGCGCCCCGGCCGCGCCTGCCGGCGGTACTGCTCGGGCGTACACCGGGCCTGGCGCTGGAACATGGCGATGAACGCCGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGACCTTGGCTACAGCAGCGCTTC                                                                                            <  8:88456/149‑1                                                                  ATGTTCAGCGCCCCGTCCGCGCCTGCCGGCGGTACTGCTCGGGCGTACACCGGGCCTGGCGCTGGAACATGGCGATGAACGCCGAAGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGACCTTGGCTACAGCAGCGCTTCG                                                                                           <  6:40814/149‑1                                                                                                                                                       AGCGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGACCTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACATTCT      <  6:361451/149‑1                                                                                                                                                         CGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGACCTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACATTCTTG    <  3:176673/149‑1                                                                                                                                                         CGCTGGAAGCCGGCCTGCCGATTCAGGCCATTGACTTCGCCCTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGA             >  1:161050/1‑140                                                                                                                                                          GCTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGACCTTGGCTACAGCAGCGCTTCGGCGTGCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACATTCTTGG   <  7:263059/149‑1                                                                                                                                                           CTGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGACCTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACATTCTTGGC  >  4:256108/1‑149                                                                                                                                                            TGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGACCTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACATTCTTGGC  >  1:398144/1‑148                                                                                                                                                            TGGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGACCTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACATTCTTGGC  >  5:200507/1‑148                                                                                                                                                                                                                                                                                                                 TTTCATGGAGTGGTCTCCTTGGCTCCGCGCCCGATGCACGGTGATCGAGCTGAGTGTAGCCAAGAATGTTCAGCGCCCCGTCCGCGCCTGCCGGCGGTACTGCTCGGGCGTACACCGGGCCTGGCGCTGGAACATGGCGATGAACGCCGAAGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5518872‑5519028 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaagcgctgGAAGCCGGCCTGCCGATTCAGGCCATTGCCTTCGACCTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACATTCTTGGC  <  NC_002947/5519075‑5518930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.