New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6142056 =	73 (1.120)	6 (0.100)	6/244	NT	7.8%	coding (1792/3159 nt)	cusA	CzcA family RND family copper transporter
	?	NC_002947	6142126 =	75 (1.250)					coding (1862/3159 nt)	cusA	CzcA family RND family copper transporter

TTCCTCGACCAGTTTCTCGCTGCTCATTCCAGGCCGCCACTGATCCTTGGGCTTGAGCCGCACAATGGTCTCGAACATCTCCAACGGTGCCGGGTCGGTAGCTGACTCTGCGCGACCGGCTTTGCCGAACACACTGGCGACCTCCGGCACCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6142208‑6142056 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcaccgt‑TGGAGATGTTCGAGACCATTGTGCGGCTCAAGCCCAAGGATCAGTGGCGGCCTGGAATGAGCAGCGAGAAACTGG‑TCGAGGAACTCGACCGTACCGTACGCGTACCGGGCCTGACCAACATCTGGATTCCGCCGATCCGCAACCGTAT  >  NC_002947/6142126‑6142273                                                                                                                                                                                                                                                                                                                 TTCCTCGACCAGTTTCTCGCTGCTCATTCCAGGCCGCCACTGATCCTTGGGCTTGAGCCGCACAATGGTCTCGAACATCTCCAACGGTGCCGGGTCGGTAGCTGACTCTGCGCGACCGGCTTTGCCGAACACACTGGCGACCTCCGGCA                                                                                                                                                            <  4:49935/149‑1    CTCGACCAGTTTCTCGCTGGTCATTCCAGGCCGCCACTGATCCTTGGGCTTGAGCCGCACAATGGTCTCGAACATCTCCAACGGTGCCGGGTCGGTAGCTGACTCTGCGCGACCGGCTTTGCCGAACACACTGGCGACCTCCGGCACCG                                                                                                                                                         >  5:63128/1‑149    CTCGACCAGTTTCTCGCTGCTCATTCCAGGCCGCCACTGATCCTTGGGCTTGAGCCGCACAATGGTCTCGAACATCTCCAACGGTGCCGGGTCGGTAGCTGACTCTGCGCGACCGGCTTTGCCGAACACACTGGCGACCTCCGGCAC                                                                                                                                                           <  1:323571/147‑1    CTCGACCAGTTTCTCGCTGCTCATTCCAGGCCGCCACTGATCCTTGGGCTTGAGCCGCACAATGGTCTCGAACATCTCCAACGGTGCCGGGTCGGTAGCTGACTCTGCGCGACCGGCTTTGCCGAACACACTGGCGACCTCCGGCAC                                                                                                                                                           >  2:323571/1‑147                                                                         GAACATCTCCAACGGTGCCGGGTCGGTAGCTGACTCTGCGCGACCGGCTTTGCCGAACACACTGGCGACCTCCGGCACCGTGCGGAGATGTTCGAGACCATTGTGCGGCTCAAGCCCAAGGATCAGTGGCGGCCTGGAATGAGCAGC                                                                                      >  2:272104/1‑147                                                                                   AACGGTGCCGGGTCGGTAGCTGACTCTGCGCGACCGGCTTTGCCGAACACACTGGCGACCTCCGGCACCGT‑TGGAGATGTTCGAGACCATTGTGCGGCTCAAGCCCAAGGATCAGTGGCGGCCTGGAATGAGCAGCGAGAAACTGG‑TC                                                                         >  3:66523/1‑148                                                                                   AACGGTGCCGGGTCGGTAGCTGACTCTGCGCGACCGGCTTTGCCGAACACACTGGCGACCTCCGGCACCGT‑TGGAGATGTTCGAGACCATTGTGCGGCTCAAGCCCAAGGATCAGTGGCGGCCTGGAATGAGCAGCGAGAAACTGG‑TC                                                                         <  4:66523/148‑1                                                                                    ACGGTGCCGGGTCGGTAGCTGACTCTGCGCGACCGGCTTTGCCGAACACACTGGCGACCTCCGGCACCGT‑TGGAGATGTTCGAGACCATTGTGCGGCTCAAGCCCAAGAATCAGTGGCGGCCTGGAATGAGCAGCGAGAAACTGG‑TC                                                                         >  2:283587/1‑147                                                                                                                             CCGAACACACAGGCGACCTCCGGGACCGT‑TGGATATGTTCGAGACCATTGTGCGGCTCAAGCCCAAGAATCAGTGGCGGCCTGGAATGATCAGCGAGAAACTGGATCGAGGAACTCGACCGTACCGTACGCGTACCGGGCCTGACCAA                                <  1:283587/148‑1                                                                                                                                  CACACTGGCGACCTCCGGCACCGTGCGGAGATGTTCGAGACCATTGTGCGGCTCAAGCCCAAGGATCAGTGGCGGCCTGGAATGAGCAGCGAGAAACTGG‑TCGAGGAACTCGTCCGTACCGTACGCGTACCGGGCCTGACCAACATCTG                          <  1:272104/149‑1                                                                                                                                                   GCACCGT‑TGGAGATGTTCGAGACCATTGTGCGGCTCAAGCCCAAGGATCAGTGGCGGCCTGGAATGAGCAGCGAGAAACTGG‑TCGAGGAACTCGACCGTACCGTACGCGTACCGGGCCTGACCAACATCTGGATTCCGCCGATCCGCAA        >  5:396311/1‑149                                                                                                                                                    CACCGT‑TGGAGATGTTCGAGACCATTGTGCGGCTCAAGCCCAAGGATCAGTGGCGGCCTGGAATGAGCAGCGAGAAACTGG‑TCGAGGAACTCGACCGTACCGTACGCGTACCGGGCCTGACCAACATCTGGATTCCGC                  >  7:159277/1‑138                                                                                                                                                    CACCGT‑TGGAGATGTTCGAGACCATTGTGCGGCTCAAGCCCAAGGATCAGTGGCGGCCTGGAATGAGCAGCGAGAAACTGG‑TCGAGGAACTCGACCGTACCGTACGCGTACCGGGCCTGACCAACATCTGGATTCCGC                  <  8:159277/138‑1                                                                                                                                                       CGT‑TGGAGATGTTCGGGACCATTGTGCGGCTCAAGCCCAAGGATCAGTGGCGGCCTGGAATGAGCAGCGAGAAACTGC‑TCGAGGAACTCGACCGTACCGTACGCGTACCGGGCCTGACCAACATCAGGATTCCGCAGATCCGCAACCc     >  7:380834/1‑147                                                                                                                                                       CGT‑TGGAGATGTTCGAGACCATTGTGCGGCTCAAGCCCAAGGATCAGTGGCGGCCTGGAATGAGCAGCGAGAAACTGG‑TCGAGGAACTCGACCGTACCGTACGCGTACCGGGCCTGACCAACATCTGGATTCCGCCGATCCGCAACCGT    <  2:312062/149‑1                                                                                                                                                         T‑TGGAGATGTTCGAGACCATTGTGCGGCTCAAGCCCAAGGATCAGTGGCGGCCTGGAATGAGCAGCGAGAAACTGG‑TCGAGGAACTCGACCGTACCGTACGCGTACCGGGCCTGACCAACATCTGGATTCCGCCGATCCGCAACCGTAT  <  2:346154/149‑1                                                                                                                                                                                                                                                                                                                 TTCCTCGACCAGTTTCTCGCTGCTCATTCCAGGCCGCCACTGATCCTTGGGCTTGAGCCGCACAATGGTCTCGAACATCTCCAACGGTGCCGGGTCGGTAGCTGACTCTGCGCGACCGGCTTTGCCGAACACACTGGCGACCTCCGGCACCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6142208‑6142056 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcaccgt‑TGGAGATGTTCGAGACCATTGTGCGGCTCAAGCCCAAGGATCAGTGGCGGCCTGGAATGAGCAGCGAGAAACTGG‑TCGAGGAACTCGACCGTACCGTACGCGTACCGGGCCTGACCAACATCTGGATTCCGCCGATCCGCAACCGTAT  >  NC_002947/6142126‑6142273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.