| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6142721 | 79 (1.210) | 6 (0.100) | 6/248 | NT | 7.1% | coding (2457/3159 nt) | cusA | CzcA family RND family copper transporter |
| ? | NC_002947 | = 6142749 | 84 (1.370) | coding (2485/3159 nt) | cusA | CzcA family RND family copper transporter | |||||
GTGCGCTACCCCCGTGAATGGCGCGATTCTGTCGACGCCTTGCGGCAGCTCCCGGTCT‑ACACCGCACAAGGGGGCCAGATTACCCTCGGCACCGTGGCCCGCGTGGGAATTGCCGAAGGCCCGCCAATGCTCAAGAGCGAGAACGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6142572‑6142721‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcccgcGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTTCTCGCTCTTGAGCATTGGCGGGCCTTCGGCAATTCCCACGCGGGCCACGGTGCCGAGGGTAATCTGGCCCCCTTGTGCGGTGTAGACCGGGAGCTGCCGCAAGGCGTCGA < NC_002947/6142749‑6142603 GTGCGCTACCCCCGTTAATTGCGCGATTCTGTCGACGCCTTGCGGCAGCTCCAGGTCT‑ACACCGCACAAGGGGGCCAGATTACCCTCGGCACCGTGGCCCGCGTGGGAATTGCCGAAGGCCCGCCAATGCTCAAGAGCGAGAACGCCCG < 4:238918/149‑1GTGCGCTACCCCCGTGAATGGCGCGATTCTGTCGACGCCTTGCGGCAGCTCCCGGTCT‑ACACCGCACAAGGGGGCCAGATTACCCTCGGCACCGTGGCCCGCGTGGGAATTGCCGAAGGCCCGCCAATGCTCAAGAGCGAGAACGCCCG > 6:24331/1‑149 CCCGTGAATGGCGCGATTCTGTCGACGCCTTGCGGCAGCTCCCGGTCT‑ACACCGCACAAGGGGGCGAGATTACCCTCGGCACCGTGGCCCGCGTGGGAATTGCCGAAGGCCCGCCAATGCTCAAGAGCGAGAACGCCCGCGTACATCGA > 1:113787/1‑149 GCCTTGCGGCAGCTCCCGGTCT‑ACTCCGCACAAGGGGGCCAGATTACCCTCGGCACCGTGGCCCGCGTGGGAATTGCCGAAGGCCCGCCAATGCTCAAGAGCGAGAACGCCGGCGTACATCGATGTACACCCAGCCAGAGGGGCGGGCG < 3:391160/149‑1 CTTGCGGCAGCTCCCGGTCT‑ACACCGCACAAGGGGGCGAGATTACCCTCGGCACCGTGGCCCGCGTGGGAATTGCCGAAGGCCCGCCAATGCTCAAGAGCGAGAACGCCCGCGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTT < 2:113787/149‑1 TTGCGGCAGCTCCCGGTCT‑ACACCGCACAAGGGGGCCAGATTACCCTCGGCACCGTGGCCCGCGTGGGAATTGCCGAAGGCCCGCCAATGCTCAAGAGCGAGAACGCCCGCGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTTC > 2:250854/1‑149 GCGGCAGCTCCCTGCGGAACACCGCACAAGGGGGCCAGATTACCCTCGGCACCGTGGCCCGCGTGGGAATTGCCGAAGGCCCGCCAATGCTCAAGAGCGAGAACGCCCGCGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTTC < 1:343707/148‑1 CGGCAGCTCCCGGTCT‑ACACCGCACAAGGGGGCCAGATTACCCTCGGCACCGTGGCCCGCGTGGGAATTGCCGAAGGCCCGCCAATGCTCAAGAGCGAGAACGCCCGCGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTTCTCG < 1:250854/149‑1 ACGCCCGCGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTTCTCGCTCTTGAGCATTGGCGGGCCTTCGGCAATTCCCACGCGGGCCACGGTGCCGAGGGTAATCTGGCCCCCTTGTGCGGTGTAGACCGGGAGCTGCCGCAAG < 4:324402/148‑1 CCGCGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTTCTCGCTCTTGAGCATTGGCGGGCCTTCGGCAATTCCCACGCGGGCCACGGTGCCGAGGGTAATCTGGCCCCCTTGTGCGGTGTAGACCGGGAGCTGCCGCAAGGCGTC > 3:168390/1‑149 CCGCGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTTCTCGCTCTTGAGCATTGGCGGGCCTTCGGCAATTCCCACGCGGGCCACGGTGCCGAGGGTAATCTGGCCCCCTTGTGCG > 5:267032/1‑120 CCGCGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTTCTCGCTCTTGAGCATTGGCGGGCCTTCGGCAATTCCCACGCGGGCCACGGTGCCGAGGGTAATCTGGCCCCCTTGTGCG < 6:267032/120‑1 GCGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTTCTCGCTCTTGAGCATTGGCGGGCCTTCGGCAATTCCCACGCGGGCCACGGTGCCGAGGGTAATCTGGCCCCCTTGTGCGGTGTAGACCGGGAGCTGCCGCAAGGCGTCGA < 4:388515/149‑1 GTGCGCTACCCCCGTGAATGGCGCGATTCTGTCGACGCCTTGCGGCAGCTCCCGGTCT‑ACACCGCACAAGGGGGCCAGATTACCCTCGGCACCGTGGCCCGCGTGGGAATTGCCGAAGGCCCGCCAATGCTCAAGAGCGAGAACGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6142572‑6142721‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcccgcGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTTCTCGCTCTTGAGCATTGGCGGGCCTTCGGCAATTCCCACGCGGGCCACGGTGCCGAGGGTAATCTGGCCCCCTTGTGCGGTGTAGACCGGGAGCTGCCGCAAGGCGTCGA < NC_002947/6142749‑6142603 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |