New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6171392 =	75 (1.150)	3 (0.050)	3/254	NT	3.5%	coding (910/1836 nt)	glmS	L‑glutamine/D‑fructose‑6‑phosphate aminotransferase
	?	NC_002947	6171430 =	94 (1.500)					coding (872/1836 nt)	glmS	L‑glutamine/D‑fructose‑6‑phosphate aminotransferase
Rejected: Frequency below/above cutoff threshold.

ACCTGTTTGCCAAGGTGCGCAACGTGCAGATCGTTGCCTGTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6171436‑6171392 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcaAACAGGTCGGCAGCTTGCGGGCCAAAGGCCTGGACCAGCACGTTGTCCTTGCCCAGGCGGCCTTCAAGCGTGCGCTGAACAACGCTTGGCTGCTCGTGAATTTCCTTGAGCATGAAGTGACGGTAAGCGCCCTTGTCGGCAGCCTCG  >  NC_002947/6171430‑6171576                                                                                                                                                                                                  ACCTGTTTGCCAAGGTGCGCAACGTGCAGATCGTTGCCTGTGGCAAACAGGTCGGCAGCTTGCGGGCCAAAGGCCTGGACCAGCACGTTGTCCTTGCCCAGGCGGCCTTCAAGCGTGCGCTGAACAACGCTTGGCTGCTCGTGAATTTC                                             >  5:176550/1‑149            AAGGTGCGCAACGTGCAGATCGTTGCCTGTGGCAAACAGGTCGGCAGCTTGCGGGCCAAAGGCCTGGACCAGCACGTTGTCCTTGCCCAGGCGGCCTTCAAGCGTGCGCTGAACAACGCTTGGCTGCTCGTGAATTTCC                                            <  7:229658/139‑1            AAGGTGCGCAACGTGCAGATCGTTGCCTGTGGCAAACAGGTCGGCAGCTTGCGGGCCAAAGGCCTGGACCAGCACGTTGTCCTTGCCCAGGCGGCCTTCAAGCGTGCGCTGAACAACGCTTGGCTGCTCGTGAATTTCC                                            >  8:229658/1‑139                                            CAAACAGGTCGGCAGCTTGCGGGCCAAAGGCCTGGACCAGCACGTTGTCCTTGCCCAGGCGGCCTTCAAGCGTGCGCTGAACAACGCTTGGCTGCTCGTGAATTTCCTTGAGCATGAAGTGACGGTAAGCGCCCTTGTCGGCAGCCTCG  <  1:182025/149‑1                                            CAAACAGGTCGGCAGCTTGCGGGCCAAAGGCCTGGACCAGCACGTTGTCCTTGCCCAGGCGGCCTTCAAGCGTGCGCTGAACAACGCTTGGCTGCTCGTGAATTTCCTTGAGCATGAAGTGACGGTAAGCGCCCTTGTCGGCAGCCTCG  <  2:268533/149‑1                                            CAAACAGGTCGGCAGCTTGCGGGCCAAAGGCCTGGACCAGCACGTTGTCCTTGCCCAGGCGGCCTTCAAGCGTGCGCTGAACAACGCTTGGCTGCTCGTGAATTTCCTTGAGCATGAAGTGACGGTAAGCGCCCTTGTCGGCAGCCTCG  >  6:149101/1‑149                                                                                                                                                                                                  ACCTGTTTGCCAAGGTGCGCAACGTGCAGATCGTTGCCTGTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6171436‑6171392 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcaAACAGGTCGGCAGCTTGCGGGCCAAAGGCCTGGACCAGCACGTTGTCCTTGCCCAGGCGGCCTTCAAGCGTGCGCTGAACAACGCTTGGCTGCTCGTGAATTTCCTTGAGCATGAAGTGACGGTAAGCGCCCTTGTCGGCAGCCTCG  >  NC_002947/6171430‑6171576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.