| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 726896 = | 36 (0.550) | 4 (0.070) | 4/236 | NT | 8.4% | intergenic (‑143/+124) | PP_0620/PP_0621 | GntR family transcriptional regulator/hypothetical protein |
| ? | NC_002947 | 726983 = | 55 (0.950) | intergenic (‑230/+37) | PP_0620/PP_0621 | GntR family transcriptional regulator/hypothetical protein | |||||
GAGCATTTCGCTATTTTTCATATTTATGCGGATAAATAGGATTTAGCGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCC > NC_002947/726748‑727041 | gAGCATTTCGCTATTTTTCATATTTATGCGGATAAATAGGATTTAGCGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAAc > 6:211293/1‑149 (MQ=255)gAGCATTTCGCTATTTTTCATATTTATGCGGATAAATAGGATTTAGCGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAAc > 1:148584/1‑149 (MQ=255) gctgtgcccattgcggcgtgcacctgcccaacgaccgggcgctgcagcagggcaatgagtggtattgcagccaggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatCt > 1:228973‑M1/148‑149 (MQ=255) cATTTCGCTATTTTTCATATTTATGCGGATAAATAGGATTTAGCGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGTATATGTGGAACACGAAATTGGAGATAAAAACtgt > 7:184391/1‑149 (MQ=255) tgcccattgcggcgtgcacctgcccaacgaccgggcgctgcagcagggcaatgagtggtattgcagccaggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatCtgtg > 2:61059‑M1/144‑148 (MQ=255) tgcccattgcggcgtgcacctgcccaacgaccgggcgctgcagcagggcaatgagtggtattgcagccaggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatCtgt > 2:167756‑M1/144‑147 (MQ=255) tgcccattgcggcgtgcacctgcccaacgaccgggcgctgcagcagggcaatgagtggtattgcagccaggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatCtgt > 5:78200‑M1/144‑147 (MQ=255) tgcccattgcggcgtgcacctgcccaacgaccgggcgctgcagcagggcaatgagtggtattgcagccaggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatCtgt > 4:298954‑M1/144‑147 (MQ=255) tgcccattgcggcgtgcacctgcccaacgaccgggcgctgcagcagggcaatgagtggtattgcagccaggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatCTGTgg > 6:148194‑M1/144‑149 (MQ=255) ccattgcggcgtgcacctgcccaacgaccgggcgctgcagcagggcaatgagtggtattgcagccaggcccacctgcagcagggccctggccgccaaggctgaagacgatgtctgttcaatcctgaaaccaattcgaaatCTGTGGGAg < 8:236808‑M1/9‑1 (MQ=255) cattgcggcgtgcacctgcccaacgaccgggcgctgcagcagggcaatgagtggtattgcagccaggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatCTGTGGGAGc > 3:67961‑M1/140‑149 (MQ=255) attgcggcgtgcacctgcccaacgaccgggcgctgcagcagggcaatgagtggtattgcagccaggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgacaccaattcgaaatCTGTGGGAGCg > 8:84697‑M1/139‑149 (MQ=255) attgcggcgtgcacctgcccaacgaccgggcgctgcagcagggcaatgagtggtattgcagccaggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatCTGTGGGAGCg < 8:324668‑M1/11‑1 (MQ=255) ttgcggcgtgcacctgcccaacgaccgggcgctgcagcagggcaatgagtggtattgcagccaggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatCTGTGGGAGCgg < 7:18843‑M1/12‑1 (MQ=255) gcggcgtgcacctgcccaacgaccgggcgctgcagcagggcaatgagtggtattgcagccaggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatCTGTGGGAGCggg > 4:162986‑M1/136‑148 (MQ=255) cATATTTATGCGGATAAATAGGATTTAGCGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGcc > 2:345725/1‑149 (MQ=255) atatTTATGCGGATAAATAGGATTTAGCGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTATATGGTGTGTAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCTGATTAAAACTGTGGGAGCGGGCGTGccc > 8:335864/1‑149 (MQ=255) aTAGGATTTAGCGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACAGGCGaac > 1:112143/1‑148 (MQ=255) tAGGATTTAGCGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGAAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGc > 1:314026/1‑149 (MQ=255) aGCGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCa > 2:100300/1‑149 (MQ=255) cGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGTAGCTGGCGTGCCCGCGAAAACCTGCGAAGCCGGTGCCAt > 2:157707/1‑148 (MQ=255) agcagggcaatgagtggtattgcagccaggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatCTGTgg > 7:366080‑M1/103‑108 (MQ=255) agcagggcaatgagtggtattgcagccaggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatCTGTgg < 8:366080‑M1/6‑1 (MQ=255) gcagggcaatgagtggtattgcagccaggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATa < 8:332751‑M1/47‑1 (MQ=255) cGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGc > 7:355009/1‑149 (MQ=255) tCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTcg > 2:256685/1‑149 (MQ=255) cctcgCTCGCCGGCGGGAGGGTTCGTAAATGGTGTGAATGGTGCGGGGAGTGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTcgc < 8:183977/145‑1 (MQ=25) aaTGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTcgc > 7:183977/1‑148 (MQ=255) ccaggcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGc < 6:419469‑M1/71‑1 (MQ=255) gcccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGcc > 7:332751‑M1/74‑149 (MQ=255) ccacctgcagcagggccctggccaccaaggctgaacacgatgtctgttcaatcctgaaaccaattcgaaatCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCg > 5:419469‑M1/72‑149 (MQ=255) ggggTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCca > 7:324668/1‑148 (MQ=255) cgcacGTAACTCGTGTCCAAGGGGCCTGGAGCGATATGTGCAACACTAAATTGAAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCcaca < 1:157707/145‑1 (MQ=18) gTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGAttt > 2:277522/1‑149 (MQ=255) gTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGAt < 6:279548/147‑1 (MQ=255) gTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGAt > 5:279548/1‑147 (MQ=255) tGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAAt > 7:113528/1‑149 (MQ=255) ggTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAAtt > 6:366476/1‑149 (MQ=255) gtgtGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAAtt < 5:366476/148‑1 (MQ=255) gAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGtt > 4:259666/1‑148 (MQ=255) ggTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGa > 2:77459/1‑149 (MQ=255) ggTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGa > 4:21800/1‑149 (MQ=255) gggagggaTATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGaa > 5:64826/1‑149 (MQ=255) gtgGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCGGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCgtg > 1:286287/1‑149 (MQ=255) gAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGtt > 6:110618/1‑148 (MQ=255) gAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGtt > 5:21078/1‑148 (MQ=255) gAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGtt > 3:282737/1‑148 (MQ=255) aaCACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGtt > 4:107712/1‑147 (MQ=255) cacGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGc > 8:18843/1‑149 (MQ=255) cacGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGACGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGc > 1:100974/1‑149 (MQ=255) acGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGcc > 2:239451/1‑149 (MQ=255) aaaTTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTtg < 8:113528/149‑1 (MQ=255) aaaTTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTtg < 1:256685/149‑1 (MQ=255) aaTTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTtg < 2:286287/148‑1 (MQ=255) ttGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTtggtg < 1:277522/149‑1 (MQ=255) ttGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTtggtg < 3:259666/149‑1 (MQ=255) aTAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAgg < 5:211293/149‑1 (MQ=255) aaaCTGTGGGAGCGGGCGTGCCGAAGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTACCACAGATTTAGAATTTGTTTCAGGATTGAACAGACATGGTGTTCAGCCTTGGTGGCCAGGGccc > 7:60190/1‑149 (MQ=37) aaaCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGccc < 6:64826/149‑1 (MQ=255) | GAGCATTTCGCTATTTTTCATATTTATGCGGATAAATAGGATTTAGCGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCC > NC_002947/726748‑727041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |