| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4889569 = | 15 (0.230) | 8 (0.150) | 7/210 | NT | 40.1% | intergenic (+15/‑138) | hyi/glxR | hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase |
| ? | NC_002947 | 4889660 = | 12 (0.230) | intergenic (+106/‑47) | hyi/glxR | hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase | |||||
ATCAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAG > NC_002947/4889426‑4889677 | gtgggtggaaatgaacaggctgtgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgaaattgtgatatctcaagcaagctttggccCCCtgt > 5:80006‑M1/144‑149 (MQ=255) gggtggaaatgaacaggctgtgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTgg < 2:408351‑M1/8‑1 (MQ=255) ggtggaaatgaacaggctgtgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTgg > 6:16870‑M1/141‑148 (MQ=255) tggaaatgaacaggctgtgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaatcgattttagccatgagaaagtacctctttgtaattgtgataactcaagcaagctttggccCCCTgtgggcg < 6:406349‑M1/11‑3 (MQ=255) tggaaatgaacaggctgtgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAg < 6:246418‑M1/11‑1 (MQ=255) aCCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACGACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCG > 5:306972‑M1/1‑149 (MQ=255) cGCTTCCTGTGCGCACACCTGGACCGCATGGGCTACCAGGGCTGGGTGGGCGCGGAGAACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAACACCCACAACGCAAGCTGAGGAACAACTCGGGACCCTGTGGGAGCGGG < 3:338054‑M1/149‑1 (MQ=255) atgaacaggctgtgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGc < 1:168750‑M1/16‑1 (MQ=255) aacaggctgtgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTc > 5:246418‑M1/131‑148 (MQ=255) aacaggctgggacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaatcgattttagccatgagaaattacctctttgtaattgtgatatctcaaggaagctttggccCCCTGTGGGAGCGGGCTc > 5:406349‑M1/131‑148 (MQ=255) gctgtgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCcgc > 4:318835‑M1/126‑149 (MQ=255) tgtgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCcgcg < 6:144499‑M1/25‑1 (MQ=255) cGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTCACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTCTGGGAGCGGGCTAGCACGCG > 4:19525‑M1/1‑148 (MQ=255) gAACACCTGGACCGCATTGGCTCCCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAA < 4:277953‑M1/149‑1 (MQ=255) gAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAA > 5:368624‑M1/1‑149 (MQ=255) tgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCCGCGa > 2:168750‑M1/122‑147 (MQ=255) tgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCGAGcccgctc > 3:24581‑M1/122‑145 (MQ=255) aaCACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAg > 7:101258‑M1/1‑148 (MQ=255) acCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACAcc > 6:163382/1‑149 (MQ=255) ctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCCGCGaa > 3:159736‑M1/118‑144 (MQ=255) ctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCCGCGaa < 4:159736‑M1/27‑1 (MQ=255) tgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCggg > 1:143658‑M1/117‑131 (MQ=255) tgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCggg < 2:143658‑M1/15‑1 (MQ=255) cTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCgg > 4:61485/1‑149 (MQ=255) gCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGA < 2:384160‑M1/135‑1 (MQ=255) gCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGA > 1:384160‑M1/1‑135 (MQ=255) ttGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGt < 5:163382/149‑1 (MQ=255) ggCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAgcagacaactcggtggat > 7:175932‑M1/1‑131 (MQ=255) caaCCAGGGCGTGGTGGCCGCGGCGTACACGCCCCTGACCACCACCTCAGCCGGCCTTGGCTGGCTGAAAACCCACAACCCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCa < 8:299788/147‑1 (MQ=37) tACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCAt > 1:9622/1‑149 (MQ=255) ctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCAt < 4:280949‑M1/48‑1 (MQ=255) gagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaatctttggccCCCTGTGGGAGCGGGATCGCCCGCCAACACAGGCAAAGCCGGTGCCATc < 4:373583‑M1/49‑1 (MQ=255) ctgggCGGGGTGGGCGGGGAGTACAAGCCGCTGACCTCCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAAGTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCa < 2:381723/147‑1 (MQ=255) gggCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCAcc > 8:305540/1‑149 (MQ=255) atgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCAcc < 4:249055‑M1/53‑1 (MQ=255) tgggCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGTAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTc < 6:368624/149‑1 (MQ=255) gggCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCt < 2:130289/149‑1 (MQ=255) ggCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCt < 3:61485/148‑1 (MQ=255) gcgGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCtt > 7:305540‑M2/1‑147 (MQ=255) cgGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCAc < 3:78397/134‑1 (MQ=255) cgGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCAc > 4:78397/1‑134 (MQ=255) ggAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGAAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAgcagacaactcggtggatgccaccggctatgccggtgttag > 5:315378‑M1/1‑108 (MQ=255) gccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCgg > 7:145759‑M1/78‑148 (MQ=255) cgggtgccgatgaaaccgtttttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGTGCTCGCCGGCGAAGACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGc > 1:338663‑M1/77‑149 (MQ=255) ccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCggg > 3:373583‑M1/77‑148 (MQ=255) ccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCggg > 3:280949‑M1/77‑148 (MQ=255) cAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAgcagacaactcggtggatggcaccggctttgccggtgttcgcgggc < 8:101258‑M1/148‑47 (MQ=255) aaatcggctgaccACCACCGTTGCGGGCCTGGTCTGTCTTAAAACCCACTAAGCAATCTGAGTAACAACTCGGGACCCTGTGGGAGCGGGCGCGCCCGCGAAgcatacaactcggtggatggcaccggctttgccggtgttagcgggc < 6:315378‑M1/142‑47 (MQ=255) ggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGa > 3:249055‑M1/75‑149 (MQ=255) aaGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAgcagacaactcggtggatggcaccggctttgccggtgttcgcgggcga < 8:175932‑M1/149‑49 (MQ=255) aaGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGa > 4:119925/1‑129 (MQ=255) aaGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGa < 3:119925/129‑1 (MQ=255) gCCGCTGACCACCACCGAAGCGGGCCGGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAgcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagc < 2:125437‑M1/149‑51 (MQ=255) cGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagccc > 2:9622‑M2/1‑134 (MQ=255) aacaccgaAGCGGGCCTGGGCTGGCTGAACACCCACAACCCAAGCTGCGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCAGCCACCGAGTTGTCTGCttcgcgggcgagcccgctcccac > 3:19525‑M2/3‑126 (MQ=255) gctgAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTgag < 6:306972/148‑1 (MQ=255) aaaCCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagc < 7:208791‑M2/111‑14 (MQ=255) aaaCCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagc > 8:208791‑M2/1‑98 (MQ=255) | ATCAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAG > NC_002947/4889426‑4889677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |