New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 380855	15 (0.230)	3 (0.060)	3/218	NT	13.2%	intergenic (+45/+64)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
	?	NC_002947	= 380889	27 (0.500)					intergenic (+79/+30)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer

GAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATG  >  NC_002947/380745‑381036                                                                                                                                                 |                                                                                                                                                    gAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGTTATCTTCAGGACTGCGGTGAACCTtgtg                                                                                                                                                 >  4:78622‑M2/1‑145 (MQ=255) gAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtg                                                                                                                                                 >  5:48952‑M2/1‑145 (MQ=255)      cGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagc                                                                                                                                            >  3:48848‑M2/1‑140 (MQ=255)               cATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtg                                                                                                                                     >  7:135408‑M2/1‑131 (MQ=255)                                                                                        ggagcgGGCGTGCCCGCTGCCACAGGGTCATCGCTATGTTCAGGCCTGCGGTGAACCTTGTGGGCGCGGGCGTGCCCGCGGCTGCTTGTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCAc                                                          >  6:129922/4‑149 (MQ=255)                                                                                                 aCGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCgcgc                                                 >  7:236549/1‑149 (MQ=255)                                                                                                   gCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTg                                               >  8:377697/1‑149 (MQ=255)                                                                                                   gCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTg                                               >  5:344226/1‑149 (MQ=255)                                                                                                    cccGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcga                                                                                                                              >  2:108644‑M2/1‑46 (MQ=255)                                                                                                    cccGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcga                                                                                                                              <  1:108644‑M2/69‑24 (MQ=255)                                                                                                     ccGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTg                                               >  6:343013/1‑147 (MQ=255)                                                                                                     ccGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTg                                               <  5:343013/147‑1 (MQ=255)                                                                                                         tCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtagccctcggc                                         <  3:254837‑M2/149‑109 (MQ=255)                                                                                                           ccACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagaatggccactggataagtaatcgatccgcaaatcccctttcggcacgctgcagcacgacaggatttaacccacggct                                        <  8:252699‑M2/148‑110 (MQ=255)                                                                                                            cacaGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtagccctcggcttc                                      >  7:252699‑M2/1‑38 (MQ=255)                                                                                                             acaGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATgcg                                     >  2:370173/1‑149 (MQ=255)                                                                                                               aGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGcc                                   >  7:360328/1‑149 (MQ=255)                                                                                                                  gTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCg                                >  4:391228/1‑149 (MQ=255)                                                                                                                      tCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAg                            >  3:160784/1‑149 (MQ=255)                                                                                                                        gCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCa                          >  4:273641/1‑149 (MQ=255)                                                                                                                        gCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCa                          >  2:207595/1‑149 (MQ=255)                                                                                                                         cTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCt                                                <  4:171325/126‑1 (MQ=255)                                                                                                                         cTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCt                                                >  3:171325/1‑126 (MQ=255)                                                                                                                            tCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCActc                       <  8:360328/148‑1 (MQ=255)                                                                                                                            tCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCActc                       <  8:236549/148‑1 (MQ=255)                                                                                                                               tCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCTACTGCTTCTAGGTGCGGAACCGGGCTAcc                                                                                                  <  2:295347/70‑1 (MQ=255)                                                                                                                               tCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCa                   >  3:174451/1‑149 (MQ=255)                                                                                                                               tCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCAACTGCTTCTAGGTGCGGAACCGGGCTAcc                                                                                                  >  1:295347/1‑70 (MQ=255)                                                                                                                                   gACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCgg                               <  5:97175/133‑1 (MQ=255)                                                                                                                                   gACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCgg                               >  6:97175/1‑133 (MQ=255)                                                                                                                                   gACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAg                            >  2:2939/1‑136 (MQ=255)                                                                                                                                   gACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAg                            <  1:2939/136‑1 (MQ=255)                                                                                                                                      tGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAg            >  1:84622/1‑149 (MQ=255)                                                                                                                                      tGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAg            >  1:327941/1‑149 (MQ=255)                                                                                                                                         ggTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTc         >  1:208820/1‑149 (MQ=255)                                                                                                                                            gAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTGCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGtt      <  7:377697/149‑1 (MQ=255)                                                                                                                                                cTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATg  <  1:370173/149‑1 (MQ=255)                                                                                                                                                cTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATg  <  3:391228/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATG  >  NC_002947/380745‑381036

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.