New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2048794 =	55 (0.850)	4 (0.070)	4/230	NT	8.7%	intergenic (+33/+106)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
	?	NC_002947	2048885 =	36 (0.640)					intergenic (+124/+15)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein

GCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCGGCCGCCACCTTCCTGCAGGGCCTGG  >  NC_002947/2048737‑2049032                                                                                                                                                      |                                                                                                                                                     gcgGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAggg                                                                                                                                                      <  8:375425/149‑1 (MQ=255)         tgCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCa                                                                                                                                               <  3:139837/148‑1 (MQ=255)                 gtggGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCgtcagtc                                                                                                                                      <  6:254552/149‑1 (MQ=255)                    ggCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCgtcagt                                                                                                                                       >  2:117168/1‑145 (MQ=255)                    ggCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGa                                                                                                                                   <  1:321598/149‑1 (MQ=255)                            aCCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATggcggc                                                                                                                            >  4:48762/1‑148 (MQ=255)                                aCCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAc‑c                                                                                                                      >  6:245653/1‑149 (MQ=255)                                    gTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCTATACCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAAGGATCTGCAGCGTCAGTCAGATTGCGGCAAAC‑CGCt                                                                                                                   >  1:120477/1‑149 (MQ=38)                                     ttttCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCt                                                                                                                   >  3:366650/1‑147 (MQ=255)                                        tCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATc                                                                                                               <  8:218217/148‑1 (MQ=255)                                          cAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAg                                                                                                            >  3:258225/1‑149 (MQ=255)                                          cAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCCCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAg                                                                                                            <  5:245653/149‑1 (MQ=255)                                                      cAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCAACGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAACGGATCTGCAGCGTCCGTAAGATGGCGGCAAAA‑CGCGCATCCAGCTAAGAgatgat                                                                                                >  8:346762/1‑149 (MQ=25)                                                       aaTCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGAtt                                                                                               <  3:48762/149‑1 (MQ=255)                                                           CTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCt                                                                                           <  1:261444‑M1/149‑1 (MQ=255)                                                            TTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCgatg                                                                                                  >  7:300205‑M1/1‑141 (MQ=255)                                                            TTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCgatg                                                                                                  <  8:300205‑M1/141‑1 (MQ=255)                                                               TGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATggcgg                                                                                                                             >  3:319222‑M1/1‑112 (MQ=255)                                                               TGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATggcgg                                                                                                                             <  4:319222‑M1/112‑1 (MQ=255)                                                               TGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGa                                                                                       >  4:366650‑M1/1‑149 (MQ=255)                                                                   gagcgggcgagcccgcgaagcaggcaccgcggtggttggcacgggctgcgcccgtgttcgcgggcacgcccgctcccacaaggGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGGAAGCGATGATTGCCTTGGACt                                                                                     >  1:397023‑M2/84‑148 (MQ=255)                                                                        GCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACAt                                                                              <  7:94147‑M1/149‑1 (MQ=255)                                                                         gcgagcccgcgaagcaggcaccgcggtggttggcacgggctgcgcccgtgttcgcgggcacgcccgctcccacaaggGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACAt                                                                              >  5:392246‑M2/78‑149 (MQ=255)                                                                            gCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAg                                                                          >  6:335413/1‑149 (MQ=255)                                                                              ccGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGt                                                                        >  1:28870/1‑149 (MQ=255)                                                                                      acGGGCGCAGCCC‑GTTCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGc                                                                <  2:120477/149‑1 (MQ=255)                                                                                      acGGGCGCAGCCC‑GTGCCTAGCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGc                                                                <  7:346762/149‑1 (MQ=255)                                                                                      acGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGc                                                                >  1:45321/1‑149 (MQ=255)                                                                                      acGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGc                                                                >  5:345638/1‑149 (MQ=255)                                                                                      acGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCACGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGc                                                                >  8:33834/1‑149 (MQ=255)                                                                                         ggCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGAGGGCACGCCCGCTCCCACAACGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCACGAAAGCCATGATAGCCTTGGACAAAAACATCCAGCTCACCTAGCCg                                                              >  7:99640/1‑148 (MQ=255)                                                                                            accgcggtggttggcacgggctgcgcccgtgttcgcgggcacgcccgctcccacaaggGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCgatgat                                                                                                <  4:404683‑M2/54‑1 (MQ=255)                                                                                            accgcggtggttggcacgggctgcgcccgtgttcgcgggcacgcccgctcccacaaggGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCgatgat                                                                                                >  3:404683‑M2/59‑112 (MQ=255)                                                                                                ccc‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCAt                                                                                  >  7:333158/1‑121 (MQ=255)                                                                                                ccc‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCAt                                                                                  <  8:333158/121‑1 (MQ=255)                                                                                                  c‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGcttctt                                                       <  2:404779/146‑1 (MQ=255)                                                                                                  c‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCGCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGcttctt                                                       >  1:404779/1‑146 (MQ=255)                                                                                                    gTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAg                                                                          <  1:108819/126‑1 (MQ=255)                                                                                                    gTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAg                                                                          >  2:108819/1‑126 (MQ=255)                                                                                                         aaCCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATgcg                                                >  6:125824/1‑147 (MQ=255)                                                                                                               cgcgGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGt                                                                        >  6:292952/1‑117 (MQ=255)                                                                                                               cgcgGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGt                                                                        <  5:292952/117‑1 (MQ=255)                                                                                                                    tGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACt                                   >  8:182902/1‑149 (MQ=255)                                                                                                                        tGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCAt                                         <  7:144550/139‑1 (MQ=255)                                                                                                                        tGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCAt                                         >  8:144550/1‑139 (MQ=255)                                                                                                                          cTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCAc                              <  2:261444/148‑1 (MQ=255)                                                                                                                             cgcgGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCg                           <  6:345638/148‑1 (MQ=255)                                                                                                                              gcgGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCgg                          <  1:117168/148‑1 (MQ=255)                                                                                                                                   cTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCGGCCGCCa                    <  7:33834/149‑1 (MQ=255)                                                                                                                                    tCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACGCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCGGCCGCCa                    >  1:299512/1‑149 (MQ=255)                                                                                                                                              ccacaaggGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCGGCCGCCACCTTCCTGCAg         >  7:125831‑M2/9‑149 (MQ=255)                                                                                                                                                acaaggGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGc                                           <  8:156343‑M2/107‑1 (MQ=255)                                                                                                                                                acaaggGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGc                                           >  7:156343‑M2/7‑113 (MQ=255)                                                                                                                                                  aaggGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCGGCCGCCACCTTCCTGCAGGGcc     >  2:57281‑M2/5‑149 (MQ=255)                                                                                                                                                    ggGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCGGCCGCCACCTTCCTGCAGGGCCTg   >  3:376541‑M2/3‑149 (MQ=255)                                                                                                                                                     gGATCTGCAGCGTGAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCGGCCGCCACCTTCCTGCAGGGCCTgg  <  8:99640‑M2/148‑1 (MQ=255)                                                                                                                                                     gGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCGGCCGCCACCTTCCTGCAGGGCCTgg  >  5:56057‑M2/2‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCC‑GTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAC‑CGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCGGCCGCCACCTTCCTGCAGGGCCTGG  >  NC_002947/2048737‑2049032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.