New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2492920 =	56 (0.860)	3 (0.050)	3/254	NT	5.9%	coding (2343/2883 nt)	PP_2185	formate dehydrogenase subunit alpha
	?	NC_002947	2492955 =	42 (0.670)					coding (2378/2883 nt)	PP_2185	formate dehydrogenase subunit alpha

AGATCATGGACGAGATCGCCCGCCTGACGCCGACCTTCCGTCGTATCAGCTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAGCCAGTACAACGTCGGCGCCCAGACCCGGCGTACCGGCAACGTCGCCTGGCAT  >  NC_002947/2492808‑2493100                                                                                                                                                     |                                                                                                                                                  gcgccgacgttgtactggctgagaatgcgcccggtggtcagcagcaacgggtagcggttgttgaccttttcgtcggtgggcacgtagccggtgagcatgaagcgccccttgcCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTgg                                                                                                                                                   <  2:208600‑M1/36‑1 (MQ=255) agaTCATGGACGAGATCGCCCGCCTGACGCCGACCTTCCGTCGTATCAGCTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTgg                                                                                                                                                   >  1:377064/1‑148 (MQ=255)   gccgacgttgtactggctgagaatgcgcccggtggtcagcagcaacgggtagcggttgttgaccttttcgtcggtgggcacgtagccggtgagcatgaagcgccccttgcCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCaa                                                                                                                                                >  1:208600‑M1/111‑149 (MQ=255)      aTGGACGAGATCGCCCGCCTGACGCCGACCTTCCGTCGTATCAGCTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGTCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAggg                                                                                                                                             <  1:70629/149‑1 (MQ=255)         gACGAGATCGCCCGCCTGACGCCGACCTTCCGTCGTATCAGCTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGgcg                                                                                                                                          >  2:282030/1‑149 (MQ=255)         gACGAGATCGCCCGCCTGACGCCGACCTTCCGTCGTATCAGCTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGgcg                                                                                                                                          >  7:270857/1‑149 (MQ=255)          aCGAGATCGCCCGCCTGACGCCGACCTTCCGTCGTATCAGCTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGgcgc                                                                                                                                         >  2:2742/1‑149 (MQ=255)             agaTCGCCCGCCTGACGCCGACCTTCCGTCGTATCAGCTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTc                                                                                                                                      <  4:337554/149‑1 (MQ=255)              gaTCGCCCGCCTGACGCCGACCTTCCGTCGTATCAGCTACGCGGCCCTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCa                                                                                                                                     >  1:360947/1‑149 (MQ=255)              gaTCGCCCGCCTGACGCCGACCTTCCGTCGTATCAGCTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCa                                                                                                                                     <  6:405034/149‑1 (MQ=255)                  gcccgccTGACGCCGACCTTCCGTCGTATCAGCTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCt                                                                                                                                 >  3:297814/1‑149 (MQ=255)                     cgccTGACGCCGACCTTCAGTCGTATCAGCTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCAc                                                                                                                              >  2:407376/1‑149 (MQ=255)                        cTGACGCCGACCTTCCGTCGTATCAGCTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCgg                                                                                                                           >  5:323509/1‑149 (MQ=255)                             gCCGACCTTCCGTCGTATCAGCTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACg                                                                                                                      >  4:5233/1‑149 (MQ=255)                                gACCTTCCGTCGTATCAGCTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGc                                                                                                                   >  8:265993/1‑149 (MQ=255)                                      ccGTCGTATCAGCTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCGCTGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCAc                                                                                                               <  1:282030/148‑1 (MQ=255)                                       cgtcgtATCAGCTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCAcgg                                                                                                             <  7:265993/148‑3 (MQ=255)                                       cgtcgtATCAGCTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACcga                                                                                                            <  5:415144/149‑1 (MQ=255)                                           gtATCAGATACGCTTAACTCGACCGCCTTGGCAGCCTGCAGTGGCCGGGCAACTAGGCTGCCCCAGACGGCACGCCGACCATGGACATCTTCCAGTTCG‑TGCGTGGCAATGGGCGCTTCATGCTCACCGGCTACGTTCCCACCGAGGaa                                                                                                        <  4:308551/149‑1 (MQ=255)                                            tATCAGCTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGaa                                                                                                        >  5:395111/1‑148 (MQ=255)                                                aGCTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGt                                                                                                   <  8:270857/149‑1 (MQ=255)                                                 gCTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTc                                                                                                  <  6:323509/149‑1 (MQ=255)                                                  cTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTca                                                                                                 <  4:92998/149‑1 (MQ=255)                                                     cgcgGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTcaa                                                                                                <  1:407376/147‑1 (MQ=255)                                                     cgcgGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTcaa                                                                                                <  4:297814/147‑1 (MQ=255)                                                       cgGAACTCGAGCGCCATGGCAGCCTGCTGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCaacaac                                                                                            <  7:200833/149‑1 (MQ=255)                                                                  cGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGtt                                                                                 >  5:208520/1‑149 (MQ=255)                                                                  cGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCAACCGACGAAAAGGTCAACAACCGCTACCCGtt                                                                                 >  2:90793/1‑149 (MQ=255)                                                                      aTGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTtgctg                                                                             <  2:377064/149‑1 (MQ=255)                                                                       tGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTtgctgc                                                                            <  3:5233/149‑1 (MQ=255)                                                                              cTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGgcgc                                                                                                                                         >  8:340147/1‑81 (MQ=255)                                                                              cTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGACCAACGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGaccac                                                                     >  1:244431/1‑149 (MQ=255)                                                                                      gCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCa                                                             >  5:132951/1‑149 (MQ=255)                                                                                       ccGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCAt                                                            <  2:360947/149‑1 (MQ=255)                                                                                             aaCGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAg                                                      >  7:92286/1‑149 (MQ=255)                                                                                                    cTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAGCCAGTAc                                               <  8:132592/149‑1 (MQ=255)                                                                                                       ccccAGACGGCAAGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGTCTACGTGCCCACCGACGAAAAGCTCAACATCCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAGCCAGTACaa                                             <  4:226878/148‑1 (MQ=255)                                                                                                         ccAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAGCCAGTACAACGt                                          >  3:44531/1‑149 (MQ=255)                                                                                                          cAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAGCCAGTACAACGTc                                         >  4:23650/1‑149 (MQ=255)                                                                                                          cAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAGCCAGTACAACGTc                                         <  6:208520/149‑1 (MQ=255)                                                                                                              ttgccacgcacgaactggtcgatgtgcatggtcggcgtgGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAGCCAGTACAACGTCGgc                                      >  1:208600‑M2/40‑149 (MQ=255)                                                                                                               ggCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAGCCAGTACAACGTCGgcgc                                    >  6:189599/1‑149 (MQ=255)                                                                                                                 ccacgcacgaactggtcgatgtgcatggtcggcgtgGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAGCCAGTACAACGTCGgcgc                                    <  2:208600‑M2/112‑1 (MQ=255)                                                                                                                  cacgcacgaactggtcgatgtgcatggtcggcgtgGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAGCCAGTACAACGTCGGCGcc                                   >  8:134211‑M2/36‑148 (MQ=255)                                                                                                                  ACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCAAGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAGCCAGTACAACGTCGGCGCCCa                                 <  8:154376‑M1/149‑1 (MQ=255)                                                                                                                        aCCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAGCCAGTACAACGTCGGCGCCCAGACCCg                           >  5:162973/1‑149 (MQ=255)                                                                                                                           aTGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAGCCAGTACAACGTCGGCGCCCAGACCCGGCg                        >  8:10231/1‑149 (MQ=255)                                                                                                                                  tCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAGCCAGTACAACGTCGGCGCCCAGACCCGGCGTACCgg                  >  1:214826/1‑148 (MQ=255)                                                                                                                                       cAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAGCCAGTACAACGTCGGCGACCAGACCCGGCGTACCGTCAACGt            >  7:230686/1‑149 (MQ=255)                                                                                                                                               tgcgtgGCAAGGGGCGCTTCATGTTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAGCCAGTACAACGTCGGCGCCCAGACCCGGCGTACCGGCAACGTCGCCTg      <  3:194961/148‑1 (MQ=255)                                                                                                                                               tgcgtgGCAAGGGGCGCTTCATGTTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAGCCAGTACAACGTCGGCGCCCAGACCCGGCGTACCGGCAACGTCGCCTg      >  4:194961/1‑148 (MQ=255)                                                                                                                                                 cgtgGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAGCCAGTACAACGTCGGCGCCCAGACCCGGCGTACCGGCAACGTCGCCTGGc    <  5:189599‑M2/144‑1 (MQ=255)                                                                                                                                                  gtgGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAGCCAGTACAACGTCGGCGCCCAGACCCGGCGTACCGGCAACGTCGCCTGGCAt  >  5:399952‑M2/4‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  AGATCATGGACGAGATCGCCCGCCTGACGCCGACCTTCCGTCGTATCAGCTACGCGGAACTCGACCGCCATGGCAGCCTGCAGTGGCCGTGCAACGACGCTGCCCCAGACGGCACGCCGACCATGCACATCGACCAGTTCG‑TGCGTGGCAAGGGGCGCTTCATGCTCACCGGCTACGTGCCCACCGACGAAAAGGTCAACAACCGCTACCCGTTGCTGCTGACCACCGGGCGCATTCTCAGCCAGTACAACGTCGGCGCCCAGACCCGGCGTACCGGCAACGTCGCCTGGCAT  >  NC_002947/2492808‑2493100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.