New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3039605	46 (0.710)	4 (0.060)	3/254	NT	9.3%	coding (690/1344 nt)	PP_2651	MFS transporter
	?	NC_002947	= 3039659	34 (0.540)					coding (744/1344 nt)	PP_2651	MFS transporter

CTGGTTCGCTTTCTACAAAAGCAAGGCGCGGTACCTGGCCGAACTGCCTGCCGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGC  >  NC_002947/3039512‑3039804                                                                                                                                                    |                                                                                                                                                  ctgGTTCGCTTTCTACAACAGCAAGGCGCGGTACCTGGCCGAACTGCCTGCCGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGaa                                                                                                                                                   <  5:2/148‑1 (MQ=255)   ggTTCGCTTTCTACAAAAGCAAGGCGCGGTACCTGGCCGAACTGCCTGCCGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAActg                                                                                                                                                <  1:69460‑M2/149‑4 (MQ=255)    gTTCGCTTTCTACAAAAGCAAGGCGCGGTACCTGGCCGAACTGCCTGCCGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAActgt                                                                                                                                               <  5:144061‑M2/149‑5 (MQ=255)    gTTCGCTTTCTACAAAAGCAAGGCGCGGTACCTGGCCGAACTGCCTGCCGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAAct                                                                                                                                                 >  1:332369‑M2/1‑145 (MQ=255)      tCGCTTTCTACAAAAGCAAGGCGCGGTACCTGGCCGAACTGCCTGCCGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTc                                                                                                                                             >  7:78698/1‑149 (MQ=255)       cGCTTTCTACAAAAGCAAGGCGCGGTACCTGGCCGAACTGCCTGCCGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTc                                                                                                                                             <  2:142563/148‑1 (MQ=255)        gCTTTCTACAAAAGCAAGGCGCGGTACCTGGCCGAACTGCCTGCCGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTcc                                                                                                                                            <  8:115879/148‑1 (MQ=255)         cTTTCTACAAAAGCAAGGCGCGGTACCTGGCCGAACTGCCTGCCGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATTAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAAGTGGCGGCGTGGGCCGAACTGTTCCGc                                                                                                                                          >  2:246307/1‑149 (MQ=255)               aCAAAAGCAAGGCGCGGTACCTGGCCGAACTGCCTGCCGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACaa                                                                                                                                     >  7:172634/1‑148 (MQ=255)                cAAAAGCAAGGCGCGGTACCTGGCCGAACTGCCTGCCGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAaga                                                                                                                                   <  8:82223/149‑1 (MQ=255)                   aaGCAAGGCGCGGTACCTGGCCGAACTGCCTGCCGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCa                                                                                                                                >  4:30591/1‑149 (MQ=255)                    aGCAAGGCGCGGTACCTGGCCGAACTGCCTGCCGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCAc                                                                                                                               <  8:78698/149‑1 (MQ=255)                    aGCAAGGCGCGGTACCTGGCCGAACTGCCTGCCGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCAc                                                                                                                               <  8:75208/149‑1 (MQ=255)                    aGCAAGGCGCGGTACCTGGCCGAACTGCCTGCCGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCAc                                                                                                                               <  6:144061/149‑1 (MQ=255)                               gTACCTGGCCGAACTGCCTGCCGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAg                                                                                                                    >  5:353587/1‑149 (MQ=255)                                             tgcctgccGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATg                                                                                                      >  3:342331/1‑149 (MQ=255)                                             tgcctgccGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATg                                                                                                      >  4:172106/1‑149 (MQ=255)                                                ctgccGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATgggg                                                                                                   <  4:342331/149‑1 (MQ=255)                                                   ccGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGt                                                                                                 >  2:182593/1‑148 (MQ=255)                                                                 cagcTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCTAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCtgtg                                                                                  >  5:384540/1‑149 (MQ=255)                                                                    ctgctgGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCt                                                                               <  8:142596/149‑1 (MQ=255)                                                                     tgctgGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTg                                                                              >  3:277846/1‑149 (MQ=255)                                                                        tgGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGCTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCac                                                                           >  8:340982/1‑149 (MQ=255)                                                                            ggcCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCacctta                                                                       >  7:14775/1‑147 (MQ=255)                                                                               ccAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGGGATCTACATGCTGTGGCTGCacctgacct                                                                    <  8:172634/149‑1 (MQ=255)                                                                                     gcATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAActgtttatgcgcttgggccgccagcagctgctcacgcgcctcggcaggcagttcggccaggtaccgcgccttgcttttgtaga                                                                <  5:56513‑M2/147‑84 (MQ=255)                                                                                     gcATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAActgtttatgcgcttgggccgccagcagctgctcacgcgcctcggcaggcagttcggccaggtaccgcgccttgcttttgtaga                                                                <  7:283964‑M2/147‑84 (MQ=255)                                                                                       aTAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCg                                                            <  3:172106/149‑1 (MQ=255)                                                                                       aTAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTACGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTCGCTGCAACTTACCTGGCTGCCg                                                            >  4:310006/1‑149 (MQ=255)                                                                                         aaaCAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCggg                                                          >  5:83794/1‑149 (MQ=255)                                                                                           aCAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCAGCTGACCTGGCTGCCGGGCt                                                        <  3:30591/149‑1 (MQ=255)                                                                                           aCAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCGGGc                                                         >  3:329819/1‑148 (MQ=255)                                                                                             aGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTTATCTACATGCTGTGGCTGCacct                                                                         <  6:40071/130‑1 (MQ=255)                                                                                             aGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTCATCTACATGCTGTGGCTGCacct                                                                         >  5:40071/1‑130 (MQ=255)                                                                                                cGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCGGGCTACTTc                                                   <  2:69460/149‑1 (MQ=255)                                                                                                   tACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCTCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCGGGCTACTTCGaa                                                <  1:102141/149‑1 (MQ=255)                                                                                                      cAAGCGCCAGGCCTAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCGGGCTACTTCGAAcgc                                             <  6:384540/149‑1 (MQ=255)                                                                                                      cAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTGCATGGGGGTGATCTACATGCTGTGGCTGCCCCTGACCTGGCTGCCGGGCTACTTCGAAcgc                                             >  3:113168/1‑149 (MQ=255)                                                                                                       aaGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCGGGCTACTTCGAAcgc                                             >  6:99482/1‑148 (MQ=255)                                                                                                           gcCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAActgtttatgcgcttgggccgccagcagctgctcacgcgcctcggcaggcagttcggccaggtaccgcgccttgcttttgtagaaagcgaaccagcaggcggcaacca                                        >  8:283964‑M2/1‑42 (MQ=255)                                                                                                                     gtgtGCAGGCACAACTGGCGGCGTGGGCCGAActgtttatgcgcttgggccgccagcagctgctcacgcgcctcggcaggcagttcggccaggtaccgcgccttgcttttgtagaaagcgaaccagcaggcggcaaccagaatgccgaa                              >  6:56513‑M2/1‑32 (MQ=255)                                                                                                                          cAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGt                          <  4:277846/148‑1 (MQ=255)                                                                                                                            ggCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTAc                        >  4:306318/1‑148 (MQ=255)                                                                                                                            ggCACAACTGGCGGCGTGGGCCGAACTGTGCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGTCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTAcc                       <  2:100051/149‑1 (MQ=255)                                                                                                                                 aaCTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGTcc                  >  4:274797/1‑149 (MQ=255)                                                                                                                                    tGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGcc               >  7:29383/1‑149 (MQ=255)                                                                                                                                                 cGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGc  <  3:306318/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  CTGGTTCGCTTTCTACAAAAGCAAGGCGCGGTACCTGGCCGAACTGCCTGCCGAGGCGCGTGAGCAGCTGCTGGCGGCCCAAGCGCATAAACAGGCGGTACCAAGCGCCAGGCCCAGTGTGCAGGCACAACTGGCGGCGTGGGCCGAACTGTTCCGCCACAAGAGCACCTGGGGCGCAGTACTGGGCTTCATGGGGGTGATCTACATGCTGTGGCTGCACCTGACCTGGCTGCCGGGCTACTTCGAACGCGAGCATGGCTTGAGCCTGTACCAGACCGCCTGGGTGGTTTCGC  >  NC_002947/3039512‑3039804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.