New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4457381 =	50 (0.770)	4 (0.060)	3/258	NT	8.0%	coding (19/696 nt)	pcaI	3‑oxoadipate CoA‑transferase subunit A
	?	NC_002947	4457483 =	43 (0.680)					coding (121/696 nt)	pcaI	3‑oxoadipate CoA‑transferase subunit A

CAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGCCCTGCTCATGGCAGGCAGCGTGCGCAAGGTGGTCTGCTCGTTCCCGCGCCAGTCCGACTCCTACGTGTTCGACGAAC  >  NC_002947/4457335‑4457630                                                                                                                                                     |                                                                                                                                                    cggcgttgttgctgatgatggtcaggtcgcgggcaccggtggcaatGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCa                                                                                                                                                     >  8:224267‑M1/47‑149 (MQ=255)    cTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTg                                                                                                                                                  >  7:190875/1‑149 (MQ=255)       cAGGAACAACCAGGAGCTCGCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCa                                                                                                                                               <  3:220458/149‑1 (MQ=255)            acaacCAGGAGCTCGCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGt                                                                                                                                          >  6:410033/1‑149 (MQ=255)            acaacCAGGAGCTCGCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGt                                                                                                                                          <  4:309068/149‑1 (MQ=255)              aacCAGGAGCTCGCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGc                                                                                                                                        <  7:18501/149‑1 (MQ=255)              aacCAGGAGCTCGCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGc                                                                                                                                        <  7:12610/149‑1 (MQ=255)                    ggtcaggtcgcgggcaccggtggcaatGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCa                                                                                                                                                     >  6:89997‑M1/28‑130 (MQ=255)                    ggtcaggtcgcgggcaccggtggcaatGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCa                                                                                                                                                     <  5:89997‑M1/103‑1 (MQ=255)                       cTCGCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACTGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCt                                                                                                                               <  7:76299/149‑1 (MQ=255)                        tCGCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTg                                                                                                                                         <  7:53211/138‑1 (MQ=255)                        tCGCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTg                                                                                                                                         >  8:53211/1‑138 (MQ=255)                          gCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGAc                                                                                                                            >  6:118995/1‑149 (MQ=255)                          gCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCAACGGTTCGCCCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGAc                                                                                                                            >  6:41242/1‑149 (MQ=255)                               gATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACcatca                                                                                                                       >  7:140019/1‑149 (MQ=255)                               gATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACcatca                                                                                                                       >  4:113992/1‑149 (MQ=255)                                   aaTAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCatcatc                                                                                                                     <  6:349345/147‑1 (MQ=255)                                   aaTAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGAAGGCCTCATTGCCACCGGTGCCCGCGACCTGACCatcatc                                                                                                                     >  5:349345/1‑147 (MQ=255)                                     tAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGTTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACcatcat                                                                                                                      <  5:291008/144‑1 (MQ=255)                                     tAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACcatcat                                                                                                                      >  6:291008/1‑144 (MQ=255)                                            tACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGc                                                                                                          >  6:220929/1‑149 (MQ=255)                                              tgaggccatcgatcagctcggacggcatgccagccgtgccgaagccaccgaccatgatggtcgaaccgtcggtaatcccttccaccgcgctggcgatggactcATTGCCACCGGTGCCCGCGACCTGAcc                                                                                                                           <  5:89997‑M2/27‑1 (MQ=255)                                              tgaggccatcgatcagctcggacggcatgccagccgtgccgaagccaccgaccatgatggtcgaaccgtcggtaatcccttccaccgcgctggcgatggactcATTGCCACCGGTGCCCGCGACCTGAcc                                                                                                                           >  6:89997‑M2/104‑130 (MQ=255)                                              tgaggccatcgatcagctcggacggcatgccagccgtgccgaagccaccgaccatgatggtcgaaccgtcggtaatcccttccaccgcgctggcgatggactcATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCg                                                                                                        >  8:224267‑M2/104‑149 (MQ=255)                                              cGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGcc                                                                                                         <  3:77618/148‑1 (MQ=255)                                               GAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCgg                                                                                                       <  3:158234‑M1/149‑1 (MQ=255)                                                    cATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACg                                                                                                  <  3:113992/149‑1 (MQ=255)                                                      tCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGc                                                                                                >  4:267474/1‑149 (MQ=255)                                                        gCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCg                                                                                               <  8:190875/148‑1 (MQ=255)                                                         ccAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTg                                                                                                                                                  <  5:197700/96‑1 (MQ=255)                                                         ccAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTg                                                                                                                                                  >  6:197700/1‑96 (MQ=255)                                                         ccAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGa                                                                                                                             <  1:212012/117‑1 (MQ=255)                                                         ccAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGa                                                                                                                             >  2:212012/1‑117 (MQ=255)                                                             cgcgGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCg                                                                                         <  8:41094/149‑1 (MQ=255)                                                                  tGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTg                                                                                    <  1:165477/149‑1 (MQ=255)                                                                  tGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCACGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTg                                                                                    <  3:260102/149‑1 (MQ=255)                                                                      aGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGgccg                                                                                >  6:76220/1‑149 (MQ=255)                                                                         tgccagccgtgccgaagccaccgaccatgatggtcgaaccgtcggtaatcccttccaccgcgctggcgatggactcATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGccc                                                                             <  7:224267‑M2/73‑1 (MQ=255)                                                                                gACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGCCCTGCTCAt                                                                      >  8:173245/1‑149 (MQ=255)                                                                                  cGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGCCCTGCTCATgg                                                                    <  3:74706/149‑1 (MQ=255)                                                                                    gTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGCCCTGCTCATggca                                                                  <  8:250571/149‑1 (MQ=255)                                                                                     ttCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGCCCTGCTCATggcag                                                                 >  5:115088/1‑149 (MQ=255)                                                                                         aCCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGACCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGTCGAGATCGGCCTGGCCGCCCTCCTCATGgcaggcag                                                             >  2:299651/1‑149 (MQ=255)                                                                                          ccATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCCCCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGCCCTGCTCATGGCAGGCAGc                                                            >  3:334991/1‑149 (MQ=255)                                                                                               atGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGCCCTGCTCATGGCAGGCAGCGTgc                                                        <  5:118995/148‑1 (MQ=255)                                                                                                   tCGGTGGCTTCGGCAGGGCTGGCATGCCGTCCTAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCACCGGCGAGATCGGCCTGGCCGCCCTGCTCATGGCAGGCAGCGTGCGCAAg                                                   <  1:299651/149‑1 (MQ=255)                                                                                                     ggTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGCCCTGCTCATGGCAGGCAGCGTGCGCAAgg                                                  <  5:410033/148‑1 (MQ=255)                                                                                                         gCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGCCCTGCTCATGGCAGGCAGCGTGCGCAAGGTGGTc                                             <  4:158234/149‑1 (MQ=255)                                                                                                           ttCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGCCCTGCTCATGGCAGGCAGCGTGCGCAAGGTGGTCTg                                           >  3:362685/1‑149 (MQ=255)                                                                                                           ttCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGCCCTGCTCATGGCAGGCAGCGTGCGCAAGGTGGTCTg                                           >  5:178214/1‑149 (MQ=255)                                                                                                              ggCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGCCCTGCTCATGGCAGGCAGCGTGCGCAAGGTGGTCTGCTc                                        <  8:140019/149‑1 (MQ=255)                                                                                                                        gCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGCCCTGCTCATGGCAGGCAGCGTGCGCAAGGTGGTCTGCTCGTTCCCgcgc                              <  4:334991/149‑1 (MQ=255)                                                                                                                               gTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGCCCTGCTCATGGCAGGCAGCGTGCGCAAGGTGGTCTGCTCGTTCCCGCGCCAGTcc                        >  4:90197/1‑148 (MQ=255)                                                                                                                                    aGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGCCCTGCTCATGGCAGGCAGCGTGCGCAAGGTGGTCTGCTCGTTCCCGCGCCAGTCCGACTcc                  >  7:80287/1‑149 (MQ=255)                                                                                                                                               ggCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGCCCTGCTCATGGCAGGCAGCGTGCGCAAGGTGGTCTGCTCGTTCCCGCGCCAGTCCGACTCCTACGTGTTcga       >  3:11785/1‑149 (MQ=255)                                                                                                                                                 ccTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGCCCTGCTCATGGCAGGCAGCGTGCGCAAGGTGGTCTGCTCGTTCCCGCGCCAGTCCGACTCCTACGTGTTcgac      >  5:212456/1‑148 (MQ=255)                                                                                                                                                  ctcATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGCCCTGCTCATGGCAGGCAGCGTGCGCAAGGTGGTCTGCTCGTTCCCGCGCCAGTCCGACTCCTACGTGTTcgacg     >  4:140672‑M2/4‑148 (MQ=255)                                                                                                                                                    cATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGCCCTGCTCATGTCAGGCAGCGTGCGCAAGGTGGTCTGCTCGTTCCCGCGCCAGTCCGACTCCTACGTGTTCGACGAAc  <  3:267474‑M2/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTGACCATCATCAGCAACAACGCCGGCAACGGCGAGATCGGCCTGGCCGCCCTGCTCATGGCAGGCAGCGTGCGCAAGGTGGTCTGCTCGTTCCCGCGCCAGTCCGACTCCTACGTGTTCGACGAAC  >  NC_002947/4457335‑4457630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.