New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5201579 =	33 (0.510)	5 (0.110)	4/190	NT	24.0%	intergenic (‑65/‑115)	PP_4582/PP_4583	membrane protein/putative Peptidase
	?	NC_002947	5201674 =	8 (0.170)					intergenic (‑160/‑20)	PP_4582/PP_4583	membrane protein/putative Peptidase

TTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGC  >  NC_002947/5201596‑5201821                                                                               |                                                                                                                                                      TTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGAc                                                                               <  2:22411‑M1/149‑1 (MQ=255)    GCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCg                                                                            <  4:215306‑M1/149‑1 (MQ=255)      GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTa                                                                          >  1:22411‑M1/1‑149 (MQ=255)       ggtaaacccgctccaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTAt                                                                         >  1:382050‑M2/73‑149 (MQ=255)       GGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTAt                                                                         <  8:50565‑M1/149‑1 (MQ=255)             cccgctccaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCaa                                                                                                   >  2:317232‑M2/67‑119 (MQ=255)             cccgctccaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCaa                                                                                                   <  1:317232‑M2/53‑1 (MQ=255)             cccgctccaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTgg                                                                   >  5:154849‑M2/67‑149 (MQ=255)              ccgctccaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGc                                                                  >  2:180266‑M2/66‑149 (MQ=255)                    CTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCaa                                                             <  6:278184‑M1/148‑1 (MQ=255)                      aCCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCACCCCCCGATTGCCCAAGCCGACCA‑‑GGCCCCCGACCCGTATGCCTGGCTGCAACAg                                                          >  2:381901/1‑149 (MQ=255)                      aCCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAg                                                          >  7:210599/1‑149 (MQ=255)                        cTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAgcg                                                        >  2:116528/1‑149 (MQ=255)                          cGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGcgcg                                                      >  4:234664/1‑149 (MQ=255)                              gCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGatac                                                  >  5:169306/1‑149 (MQ=255)                                 aTCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑AGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACAcccc                                               >  7:246509/1‑149 (MQ=255)                                  tCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACAccccc                                              <  7:50565/149‑1 (MQ=255)                                    ccTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACAccccc                                              >  6:216114/1‑147 (MQ=255)                                     cTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAg                                           <  5:216114/149‑1 (MQ=255)                                     cTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAg                                           <  8:210599/149‑1 (MQ=255)                                        ttGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCTAGGTa                                        >  7:145311/1‑149 (MQ=255)                                                 gtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTAc                               <  5:278184‑M2/119‑1 (MQ=255)                                                 gtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACACGCTTAc                               >  3:252079‑M2/31‑149 (MQ=255)                                                   ttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCATCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGGATGCCTGGCTGCAACAGCGCGACCACCCCGAGGTACTCGCTTACCt                             >  6:397531‑M2/29‑149 (MQ=255)                                                       ccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGc                           >  4:266780‑M2/25‑147 (MQ=255)                                                       ccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGc                           >  1:312586‑M2/25‑147 (MQ=255)                                                       ccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGACTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCa                          >  8:78441‑M2/25‑148 (MQ=255)                                                       ccgcgaagaggcccgcacaggcaaCACCAATCAACAGACCTTCAAAGCCAACCCAGCCCCAACCCCCGATTGCCCAAGCCGACCACTGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGc                           <  1:116528‑M2/125‑1 (MQ=255)                                                         gcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAg                        >  8:26140‑M2/23‑148 (MQ=255)                                                         gcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGc                       <  7:26140‑M2/127‑1 (MQ=255)                                                         gcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGc                       >  8:306811‑M2/23‑149 (MQ=255)                                                         gcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGc                       >  4:371876‑M2/23‑149 (MQ=255)                                                               aggcctgcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGaaaa                 <  1:180266‑M2/133‑1 (MQ=255)                                                                ggccggcacaggcaaATCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCGCAAGCCGACCA‑‑GTCCACGGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTgaaaag                <  5:397531‑M2/134‑2 (MQ=255)                                                                 gccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACACCCGAGGTACTCCCTTACCTGCAAGCTGAAAACg               >  7:180419‑M2/15‑149 (MQ=255)                                                                  ccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGc              <  6:154849‑M2/136‑1 (MQ=255)                                                                   cggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGc              >  4:18531‑M2/13‑148 (MQ=255)                                                                      cacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTAc          <  8:246509‑M2/140‑1 (MQ=255)                                                                       acaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTAcc         <  3:215306‑M2/141‑1 (MQ=255)                                                                         aggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCACGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAg       >  1:292708‑M2/7‑149 (MQ=255)                                                                           gcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAgg      >  4:328132‑M2/5‑148 (MQ=255)                                                                            caaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGaa    <  3:328132‑M2/146‑1 (MQ=255)                                                                              aCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGc  <  4:252079‑M2/148‑1 (MQ=255)                                                                               |                                                                                                                                                      TTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCA‑‑GGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGC  >  NC_002947/5201596‑5201821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.